Feature/535 stratification diag #149
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: notebook_to_md (general) | |
| on: pull_request | |
| jobs: | |
| commit-notebooks: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout site | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive # Fetch Hugo themes and all extra projects | |
| fetch-depth: 0 # Fetch all history for .GitInfo and .Lastmod | |
| path: site | |
| - name: Checkout coast | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: British-Oceanographic-Data-Centre/COAsT | |
| ref: develop | |
| path: external | |
| - name: Prepare environment | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| activate-environment: coast | |
| environment-file: external/environment.yml | |
| - name: prep exec notebooks | |
| run: | | |
| conda info | |
| conda list | |
| conda config --show | |
| cd $GITHUB_WORKSPACE/external | |
| sudo apt install wget unzip -y | |
| wget -q https://linkedsystems.uk/erddap/files/COAsT_example_files/COAsT_example_files.zip | |
| unzip COAsT_example_files.zip && mv COAsT_example_files ./example_scripts/notebook_tutorials/runnable_notebooks/general/example_files | |
| mkdir -p ./example_scripts/notebook_tutorials/markdown/general | |
| ls ./example_scripts/notebook_tutorials | |
| pip install . | |
| sudo apt-get update | |
| sudo apt-get install -y libgeos-dev | |
| pip install cartopy==0.21.0 | |
| pip install zarr | |
| pip install xarray[complete] | |
| pip install aiohttp requests | |
| mv config ./example_scripts/notebook_tutorials/runnable_notebooks/general/config | |
| bash notebook_to_md.sh general |