correct dependencies to use zarr

British-Oceanographic-Data-Centre · Dec 11, 2023 · 8d84563 · 8d84563
1 parent b56350c
commit 8d84563
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/example_scripts/notebook_tutorials/runnable_notebooks/general/zarr_files.ipynb b/example_scripts/notebook_tutorials/runnable_notebooks/general/zarr_files.ipynb
@@ -44,7 +44,7 @@
    "id": "761fde27-8ef4-4805-887c-d795da34902e",
    "metadata": {},
    "source": [
-    "`pip install zarr`"
+    "`pip install zarr xarray[complete] aiohttp requests`"
    ]
   },
   {

diff --git a/notebook_to_md.sh b/notebook_to_md.sh
@@ -5,7 +5,7 @@ directory=$1
 
 # Convert ipynb files to markdown.
 echo "starting notebook execute for ${directory}"
-jupyter nbconvert --to notebook --execute example_scripts/notebook_tutorials/runnable_notebooks/${directory}/*.ipynb --log-level=DEBUG --allow-errors --output-dir example_scripts/notebook_tutorials/runnable_notebooks/executed/${directory}/
+jupyter nbconvert --to notebook --execute example_scripts/notebook_tutorials/runnable_notebooks/${directory}/*.ipynb --allow-errors --output-dir example_scripts/notebook_tutorials/runnable_notebooks/executed/${directory}/
 echo "starting notebook convert"
 jupyter nbconvert --to markdown example_scripts/notebook_tutorials/runnable_notebooks/executed/${directory}/*.ipynb --output-dir example_scripts/notebook_tutorials/markdown/${directory}/
 echo "starting clean up (rm)"