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Merge pull request #1 from CABLE-LSM/conda
Create a conda package
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,7 +1,6 @@ | ||
| src/* | ||
| runs/* | ||
| scripts/__pycache__/* | ||
| __pycache__/* | ||
| .DS_Store | ||
| plots/* | ||
| ./benchmark_cable_qsub.sh | ||
| *.pyc | ||
| benchcab.egg-info | ||
| build/ |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,6 @@ | ||
| Aidan Heerdegen <[email protected]> | ||
| C. Carouge <[email protected]> | ||
| Claire <[email protected]> | ||
| Claire Carouge <[email protected]> | ||
| Martin De Kauwe <[email protected]> | ||
| mdekauwe <[email protected]> |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,257 @@ | ||
| CHANGES | ||
| ======= | ||
|
|
||
| * Update README | ||
| * Use site data published in ks32 | ||
| * Add running the configurations | ||
| * .gitignore files from install | ||
| * Fix: re-building source code | ||
| * Add building CABLE | ||
| * Fix setup with setup.cfg | ||
| * Moved all setup phases into a class | ||
| * Add setup for compilation | ||
| * Fix issue with configuration file format | ||
| * simplify the file structure | ||
| * Attempt to build for command line | ||
| * Define input config in yaml | ||
| * Create min. work directory tree | ||
| * Modify command line args | ||
| * Add simple command line | ||
| * Clean start | ||
| * Update .gitignore | ||
| * Add LICENSE | ||
| * separate inputs by type of input | ||
| * Update README.md | ||
| * Update README.md | ||
| * Forgotten loading the python module | ||
| * To run on multi-processors | ||
| * Some typos in the README file | ||
| * More docs updates to make things simpler for users | ||
| * Updated documentation | ||
| * Use hh5 environments in qsub script | ||
| * Load hh5 conda environment in qsub script | ||
|
|
||
| v0.1 | ||
| ---- | ||
|
|
||
| * Serial runs only work for now | ||
| * Fix imports | ||
| * update all from optparse to argparse | ||
| * Black formatting | ||
| * A few missing things for mpi exe. name | ||
| * Add "-mpi" to exe name if compiled with mpi | ||
| * "Fix" error handling for subprocess. To update | ||
| * Import submodules properly | ||
| * Update to argparse. Remove append to path for imports | ||
| * To work with updated build script for CABLE | ||
| * Update how to find compilation options for Gadi | ||
| * Simplify check for NCI machine | ||
| * Update to Argparse from optparse | ||
| * Don't append to path for imports | ||
| * replace "is" with "==" | ||
| * fixes for jhan | ||
| * removed date | ||
| * fixed sys exit | ||
| * Added xarray | ||
| * fixed dates issue | ||
| * fixed for jhan | ||
| * fixed for share branch | ||
| * fixed option to pass user branch | ||
| * test more cores | ||
| * test more cores | ||
| * Changed call | ||
| * test | ||
| * test | ||
| * reduced core calls | ||
| * added unload openmpi | ||
| * changed logging options | ||
| * Added netcdf unload cmd | ||
| * fixed filename | ||
| * fixed seasonal plot wrapper | ||
| * Fixed logic for qsub | ||
| * fixed mpi | ||
| * fix for unused cores | ||
| * fix for unused cores | ||
| * changed default mpi | ||
| * removed clean | ||
| * fixed cmd line parser | ||
| * matched other run script | ||
| * matched other run script | ||
| * Added flag to build sep of get | ||
| * fixed literals | ||
| * removed qsub | ||
| * Changed tests | ||
| * Added NCI hint | ||
| * fixed literals issue | ||
| * fix for gadi modules | ||
| * fix for ifort | ||
| * fix for ifort | ||
| * fix for ifort | ||
| * fix for ifort | ||
| * fix for ifort | ||
| * fix for ifort | ||
| * fix for ifort | ||
| * added debug | ||
| * added debug | ||
| * fixed literal issue? | ||
| * test for gadi fi | ||
| * fixed storm server paths | ||
| * fixed storm server paths | ||
| * Added missing lib | ||
| * Added missing lib | ||
| * Added catch for anna | ||
| * fixed typo | ||
| * Changed storm paths | ||
| * clean up | ||
| * filename cleanup | ||
| * Added plumber path for storm | ||
| * changed trunk name | ||
| * blah | ||
| * added unplumbed spatial | ||
| * Added spatial file, needs editing | ||
| * fixed new name | ||
| * renamed file | ||
| * Added -s flag | ||
| * Added -s flag | ||
| * fixed met path | ||
| * fixed met path | ||
| * fixed met path | ||
| * fixed met path | ||
| * fixed to get it working again | ||
| * fixed paths | ||
| * fixed typos | ||
| * changed pbs options | ||
| * updated met files | ||
| * rolled back update utils | ||
| * updated utils | ||
| * updated text to include mention of integration | ||
| * fixed paths for gadi | ||
| * changed nc path | ||
| * changed paths for gadi | ||
| * changed paths for gadi | ||
| * changed paths for gadi | ||
| * Added note on integration branch | ||
| * Commented out old ver | ||
| * Added newline | ||
| * Changed subprocess call to one that automatically raises exception with error | ||
| * Tweaked multiprocessing code | ||
| * Tweaked multiprocessing code | ||
| * Fixed met flag | ||
| * Tweaked options | ||
| * Added sci config | ||
| * Added sci config | ||
| * Added further sci configs | ||
| * tweaked usage request | ||
| * Removed removal of src | ||
| * Removed file | ||
| * Fixed ignore | ||
| * Fixed ignore | ||
| * Changed path | ||
| * Fixed stupid logic | ||
| * Changed qsub options | ||
| * Added comment | ||
| * Turned on MPI | ||
| * Removed date from Trunk | ||
| * Made integration the default | ||
| * Made integration the default | ||
| * Added script to gen integration branch | ||
| * Added missing numpy | ||
| * Fixed home bug | ||
| * Added password SVN option | ||
| * Added missing dict check | ||
| * Added missing dict check | ||
| * Put back missings args | ||
| * Fixed options typo | ||
| * Added additional check | ||
| * Further edits | ||
| * Further edits | ||
| * Further edits | ||
| * Fixed readme | ||
| * removed wrapper script | ||
| * Split and reorganised files to work on PBS | ||
| * Renamed file | ||
| * Renamed file | ||
| * Removed correct command for non empty dir | ||
| * Removed debug stuff | ||
| * Added initial clean up of src dir | ||
| * Fixed netcdf load | ||
| * Fixed netcdf load | ||
| * Fixed netcdf load | ||
| * added debug statements | ||
| * added debug statements | ||
| * added debug statements | ||
| * added pbs wd | ||
| * added pbs wd | ||
| * added pbs wd | ||
| * added pbs wd | ||
| * various fixes to nci script | ||
| * changed raijin testing | ||
| * changed raijin testing | ||
| * Added qsub script | ||
| * Changed raijin met path | ||
| * Fixed raijin netcdf libs | ||
| * Changed paths on storm server to match old plumber files | ||
| * Changed paths for storm server | ||
| * Changed paths for storm server | ||
| * Changed paths for storm server | ||
| * Changed paths for storm server | ||
| * Added case for imac | ||
| * Added repo id and site id, for MPI stuff | ||
| * Fixed Matplotlib Deprecation Warning | ||
| * Moved paths bit to reduce immediate options | ||
| * Moved paths bit to reduce immediate options | ||
| * Added different NC paths | ||
| * Added different met paths | ||
| * Added different met paths | ||
| * Added functionality to not use the trunk | ||
| * Added options for rajin storm | ||
| * Added options for rajin storm | ||
| * Added options for rajin storm | ||
| * Added options for rajin storm | ||
| * updated ignore | ||
| * Removed stats stuff | ||
| * Tweaked comment layout | ||
| * Tweaked comment layout | ||
| * Removed change path bug | ||
| * Removed change path bug | ||
| * Fixed mis-step when it changes to run dir | ||
| * Fixed plot fname | ||
| * swapped png for pdf | ||
| * Updated readme | ||
| * Updated readme | ||
| * Updated readme | ||
| * Updated readme | ||
| * Updated readme | ||
| * Updated readme | ||
| * Updated readme | ||
| * Updated readme | ||
| * Updated readme | ||
| * Updated readme info | ||
| * Updated readme info | ||
| * Updated readme info | ||
| * Updated readme info | ||
| * Updated readme info | ||
| * Updated readme info | ||
| * plugged in plots | ||
| * Added plot script | ||
| * Moved logic to wrapper | ||
| * removed duplicate file | ||
| * removed duplicate file | ||
| * Removed debug statement | ||
| * passing repo id | ||
| * passing repo id | ||
| * moved sci configs | ||
| * Removed default clean option | ||
| * Remved old thing | ||
| * Added sci config changes | ||
| * Big reorganisation | ||
| * Added script to build executables | ||
| * Added script to build executables | ||
| * Added funcs to get different branch | ||
| * Added funcs to get repos | ||
| * Added bones | ||
| * updated readme | ||
| * updated readme | ||
| * updated readme | ||
| * updated readme | ||
| * first commit |
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