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Merge pull request #87 from gymrek-lab/mlamkin7-patch-1
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Update README.md
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mlamkin7 authored Aug 24, 2022
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Expand Up @@ -26,7 +26,7 @@ Haptools consists of multiple utilities listed below. Click on a utility to see

* [`haptools simphenotype`](docs/commands/simphenotype.md): Simulate a complex trait, taking into account local ancestry- or haplotype- specific effects. `haptools simphenotype` takes as input a VCF file and outputs simulated phenotypes for each sample.

* [`haptools karyogram`](docs/commands/karyogram.md): Visualize a "chromosome painting" of local ancestry labels based on breakpoints output by `haptools simgenome`.
* [`haptools karyogram`](docs/commands/karyogram.md): Visualize a "chromosome painting" of local ancestry labels based on breakpoints output by `haptools simgenotype`.

* [`haptools transform`](https://haptools.readthedocs.io/en/latest/commands/transform.html): Transform a set of genotypes via a list of haplotypes. Create a new VCF containing haplotypes instead of variants.

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