Merge pull request #22 from CBBIO/fantasia

Fantasia

protein_metamorphisms_is/pipelines/fantasia/embedder.py

@@ -8,8 +8,11 @@
 
 Background
 ----------
+
 This module includes functionalities inspired by:
-- **BioEmbeddings**: Techniques for embedding generation and model handling are adapted from the BioEmbeddings framework. For more details, visit https://docs.bioembeddings.com.
+
+- **BioEmbeddings**: Techniques for embedding generation and model handling are adapted from the
+ BioEmbeddings framework. For more details, visit https://docs.bioembeddings.com.
 
 Custom enhancements allow for efficient batch processing and integration with CD-HIT for redundancy filtering.
 

protein_metamorphisms_is/pipelines/fantasia/lookup.py

@@ -7,10 +7,14 @@
 
 Background
 ----------
+
 This module integrates functionalities inspired by:
-- **GoPredSim**: The GO term similarity and distance-based lookup functionalities are adapted from GoPredSim (https://github.com/Rostlab/goPredSim).
 
-Additionally, customizations have been made to ensure seamless integration with the vectorial database and HDF5-based embedding storage used in this pipeline.
+- **GoPredSim**: The GO term similarity and distance-based lookup functionalities are adapted from GoPredSim
+(https://github.com/Rostlab/goPredSim).
+
+Additionally, customizations have been made to ensure seamless integration with
+the vectorial database and HDF5-based embedding storage used in this pipeline.
 
 """
 

pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "protein_metamorphisms_is"
-version = "1.4.0"
+version = "1.4.1"
 description = "Comprehensive Python Module for Protein Data Management: Designed for streamlined integration and processing of protein information from both UniProt and PDB. Equipped with features for concurrent data fetching, robust error handling, and database synchronization."
 authors = ["frapercan <[email protected]>"]
 readme = "README.md"