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Some README fixes
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spirosmaggioros committed Sep 14, 2024
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## Overview

DLICV uses a trained [nnUNet](https://github.com/MIC-DKFZ/nnUNet/tree/nnunetv1) model to compute the intracranial volume from structural MRI scans in the nifti image format, oriented in _**LPS**_ orientation.
DLICV uses a trained [nnUNet](https://github.com/MIC-DKFZ/nnUNet) model to compute the intracranial volume from structural MRI scans in the nifti image format, oriented in _**LPS**_ orientation.

## Installation

To install DLICV, just do
```bash
pip install DLICV
pip install DLICV
```

Or to manually download DLICV
```bash
pip install -e .
pip install -e .
```

We have all the requirements ready at 'requirements.txt', just do
You can install the required packages with
```bash
pip3 install -r requirements.txt
pip install -r requirements.txt
```

## How to run
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- set input_folder_path
- set output_folder_path
- sbatch sample_submit_inference.sh

Notice: A small dataset is provided for you in test/DLICV_test_images/ folder to try

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