Fix URL for gatk script

CDCgov · Feb 2, 2023 · 3279dcd · 3279dcd
1 parent 7cd1c41
commit 3279dcd
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/get_gatk.sh b/get_gatk.sh
@@ -4,16 +4,16 @@
 # Description:
 # Usage:
 # Date Created: 2023-01-23 14:30
-# Last Modified: Mon 23 Jan 2023 08:22:39 PM EST
+# Last Modified: Wed 25 Jan 2023 10:02:39 AM EST
 # Author: Reagan Kelly ([email protected])
 #
 
 DL_URL='https://github.com/broadinstitute/gatk/releases/download/4.2.4.0/gatk-4.2.4.0.zip'
 
 mkdir tmp
 cd tmp
-wget -O- $URL >gatk-4.2.4.0.zip
+wget -O- $DL_URL >gatk-4.2.4.0.zip
 unzip gatk-4.2.4.0.zip
-mv gatk-package-4.2.4.0-local.jar ../tools/gatk-4.2.4.0/
+mv gatk-4.2.4.0/gatk-package-4.2.4.0-local.jar ../tools/gatk-4.2.4.0/
 cd ../
 rm -rf tmp/