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update infectionswithfeedback process #440

Merged
merged 27 commits into from
Sep 17, 2024
Merged

update infectionswithfeedback process #440

merged 27 commits into from
Sep 17, 2024

Commits on Sep 10, 2024

  1. add function to pad using edge values and tests

    @sbidari
    sbidari committed Sep 10, 2024
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  2. modify convolve and infectionwithfeedback to work with 2d array

    @sbidari
    sbidari committed Sep 10, 2024
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  3. Merge branch 'main' into 435-update-infectionswithfeedback-process-to… 

    …-handle-batch-input-within-numpyro-plate-context
    @sbidari
    sbidari authored Sep 10, 2024
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Commits on Sep 11, 2024

  1. test convolve scanner for 2d arrays

    @sbidari
    sbidari committed Sep 11, 2024
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  2. Merge branch 'main' of https://github.com/CDCgov/PyRenew into 435-upd… 

    …ate-infectionswithfeedback-process-to-handle-batch-input-within-numpyro-plate-context
    @sbidari
    sbidari committed Sep 11, 2024
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  3. add tests for 2d array, infectionsrtfeedback

    @sbidari
    sbidari committed Sep 11, 2024
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  4. more tests

    @sbidari
    sbidari committed Sep 11, 2024
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Commits on Sep 12, 2024

  1. remove pad to match functions

    @sbidari
    sbidari committed Sep 12, 2024
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  2. remove tests

    @sbidari
    sbidari committed Sep 12, 2024
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  3. use list comprehension in test_infectionsrtfeedback

    @sbidari
    sbidari committed Sep 12, 2024
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  4. revert to using for loop

    @sbidari
    sbidari committed Sep 12, 2024
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  5. add more test for convolve scanner functions

    @sbidari
    sbidari committed Sep 12, 2024
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  6. Merge branch 'main' into 435-update-infectionswithfeedback-process-to… 

    …-handle-batch-input-within-numpyro-plate-context
    @sbidari
    sbidari authored Sep 12, 2024
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  7. add check for initial infections and Rt ndims

    @sbidari
    sbidari committed Sep 12, 2024
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  8. Merge branch '435-update-infectionswithfeedback-process-to-handle-bat… 

    …ch-input-within-numpyro-plate-context' of https://github.com/CDCgov/PyRenew into 435-update-infectionswithfeedback-process-to-handle-batch-input-within-numpyro-plate-context
    @sbidari
    sbidari committed Sep 12, 2024
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  9. remove typos and superfluous print statements

    @sbidari
    sbidari committed Sep 12, 2024
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  10. add more tests

    @sbidari
    sbidari committed Sep 12, 2024
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  11. change value of inf_feedback in tests to cover diff scenarios

    @sbidari
    sbidari committed Sep 12, 2024
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  12. add input array tests for infections.py

    @sbidari
    sbidari committed Sep 12, 2024
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Commits on Sep 13, 2024

  1. add test with plate

    @sbidari
    sbidari committed Sep 13, 2024
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  2. Merge branch 'main' into 435-update-infectionswithfeedback-process-to… 

    …-handle-batch-input-within-numpyro-plate-context
    @sbidari
    sbidari authored Sep 13, 2024
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  3. code review changes

    @sbidari
    sbidari committed Sep 13, 2024
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  4. Merge branch '435-update-infectionswithfeedback-process-to-handle-bat… 

    …ch-input-within-numpyro-plate-context' of https://github.com/CDCgov/PyRenew into 435-update-infectionswithfeedback-process-to-handle-batch-input-within-numpyro-plate-context
    @sbidari
    sbidari committed Sep 13, 2024
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  5. code review suggestion

    @sbidari
    sbidari committed Sep 13, 2024
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  6. replace jnp.dot with einsum

    @sbidari
    sbidari committed Sep 13, 2024
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Commits on Sep 16, 2024

  1. code review suggestions

    @sbidari
    sbidari committed Sep 16, 2024
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Commits on Sep 17, 2024

  1. code review changes

    @sbidari
    sbidari committed Sep 17, 2024
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