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Bump pillow from 10.2.0 to 10.3.0 in /model #56

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Apr 3, 2024
Merged

Bump pillow from 10.2.0 to 10.3.0 in /model #56

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5633a14
Bump pillow from 10.2.0 to 10.3.0 in /model
dependabot[bot] Apr 3, 2024
61d1879
Adding pillow to dependencies
gvegayon Apr 3, 2024
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4 changes: 2 additions & 2 deletions model/docs/getting-started.md
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Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@


This document illustrates two features of `pyrenew`: (a) the set of
included `RandomVariable`es, and (b) model composition.
included `RandomVariable`s, and (b) model composition.

## Hospitalizations model

Expand Down Expand Up @@ -88,7 +88,7 @@ from pyrenew.observation import PoissonObservation
from pyrenew.model import RtInfectionsRenewalModel
```

/home/xrd4/.cache/pypoetry/virtualenvs/pyrenew-B3vwhbMF-py3.10/lib/python3.10/site-packages/tqdm/auto.py:21: TqdmWarning: IProgress not found. Please update jupyter and ipywidgets. See https://ipywidgets.readthedocs.io/en/stable/user_install.html
/mnt/c/Users/xrd4/Documents/repos/msr/model/.venv/lib/python3.10/site-packages/tqdm/auto.py:21: TqdmWarning: IProgress not found. Please update jupyter and ipywidgets. See https://ipywidgets.readthedocs.io/en/stable/user_install.html
from .autonotebook import tqdm as notebook_tqdm
An NVIDIA GPU may be present on this machine, but a CUDA-enabled jaxlib is not installed. Falling back to cpu.

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71 changes: 38 additions & 33 deletions model/docs/pyrenew_demo.md
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Expand Up @@ -18,10 +18,15 @@ from numpyro.handlers import seed
import numpyro.distributions as dist
```

/mnt/c/Users/xrd4/Documents/repos/msr/model/.venv/lib/python3.10/site-packages/tqdm/auto.py:21: TqdmWarning: IProgress not found. Please update jupyter and ipywidgets. See https://ipywidgets.readthedocs.io/en/stable/user_install.html
from .autonotebook import tqdm as notebook_tqdm

``` python
from pyrenew.process import SimpleRandomWalkProcess
```

An NVIDIA GPU may be present on this machine, but a CUDA-enabled jaxlib is not installed. Falling back to cpu.

``` python
np.random.seed(3312)
q = SimpleRandomWalkProcess(dist.Normal(0, 0.001))
Expand Down Expand Up @@ -124,39 +129,39 @@ hospmodel.print_summary()


mean std median 5.0% 95.0% n_eff r_hat
I0 7.15 1.69 6.87 4.50 9.76 1597.65 1.00
IHR 0.05 0.00 0.05 0.05 0.05 1957.10 1.00
Rt0 1.13 0.12 1.13 0.92 1.31 1204.75 1.00
Rt_transformed_rw_diffs[0] -0.00 0.02 -0.00 -0.04 0.04 1543.92 1.00
Rt_transformed_rw_diffs[1] -0.00 0.03 0.00 -0.04 0.05 1624.77 1.00
Rt_transformed_rw_diffs[2] -0.00 0.02 -0.00 -0.04 0.04 1906.13 1.00
Rt_transformed_rw_diffs[3] -0.00 0.02 -0.00 -0.04 0.04 2581.47 1.00
Rt_transformed_rw_diffs[4] -0.00 0.02 -0.00 -0.04 0.04 2354.67 1.00
Rt_transformed_rw_diffs[5] 0.00 0.03 0.00 -0.05 0.04 2350.32 1.00
Rt_transformed_rw_diffs[6] 0.00 0.02 0.00 -0.04 0.04 1942.94 1.00
Rt_transformed_rw_diffs[7] -0.00 0.02 -0.00 -0.04 0.04 2280.75 1.00
Rt_transformed_rw_diffs[8] -0.00 0.03 -0.00 -0.04 0.04 1875.19 1.00
Rt_transformed_rw_diffs[9] 0.00 0.03 0.00 -0.04 0.04 2007.68 1.00
Rt_transformed_rw_diffs[10] -0.00 0.02 -0.00 -0.04 0.04 2108.68 1.00
Rt_transformed_rw_diffs[11] -0.00 0.03 0.00 -0.04 0.04 1479.90 1.00
Rt_transformed_rw_diffs[12] 0.00 0.02 0.00 -0.04 0.04 2256.27 1.00
Rt_transformed_rw_diffs[13] -0.00 0.03 -0.00 -0.04 0.04 1261.43 1.00
Rt_transformed_rw_diffs[14] -0.00 0.03 -0.00 -0.04 0.04 1974.44 1.00
Rt_transformed_rw_diffs[15] -0.00 0.03 -0.00 -0.04 0.04 2245.66 1.00
Rt_transformed_rw_diffs[16] -0.00 0.02 0.00 -0.04 0.04 1630.22 1.00
Rt_transformed_rw_diffs[17] 0.00 0.03 0.00 -0.04 0.04 1756.48 1.00
Rt_transformed_rw_diffs[18] 0.00 0.02 -0.00 -0.04 0.04 1706.49 1.00
Rt_transformed_rw_diffs[19] 0.00 0.03 -0.00 -0.04 0.04 2176.36 1.00
Rt_transformed_rw_diffs[20] 0.00 0.02 -0.00 -0.04 0.04 2021.24 1.00
Rt_transformed_rw_diffs[21] 0.00 0.02 0.00 -0.04 0.04 2242.62 1.00
Rt_transformed_rw_diffs[22] 0.00 0.03 0.00 -0.04 0.04 1988.97 1.00
Rt_transformed_rw_diffs[23] 0.00 0.02 0.00 -0.04 0.03 2113.37 1.00
Rt_transformed_rw_diffs[24] 0.00 0.02 0.00 -0.04 0.04 2179.13 1.00
Rt_transformed_rw_diffs[25] -0.00 0.02 -0.00 -0.04 0.03 1770.54 1.00
Rt_transformed_rw_diffs[26] 0.00 0.03 0.00 -0.04 0.05 2101.45 1.00
Rt_transformed_rw_diffs[27] -0.00 0.03 0.00 -0.04 0.04 1752.68 1.00
Rt_transformed_rw_diffs[28] -0.00 0.02 -0.00 -0.04 0.04 1537.43 1.00
Rt_transformed_rw_diffs[29] -0.00 0.03 -0.00 -0.04 0.04 1837.84 1.00
I0 7.14 1.75 6.87 4.30 9.69 1052.68 1.00
IHR 0.05 0.00 0.05 0.05 0.05 1712.91 1.00
Rt0 1.13 0.12 1.13 0.92 1.32 960.40 1.00
Rt_transformed_rw_diffs[0] -0.00 0.02 -0.00 -0.04 0.04 1315.29 1.00
Rt_transformed_rw_diffs[1] -0.00 0.03 0.00 -0.04 0.04 1886.70 1.00
Rt_transformed_rw_diffs[2] -0.00 0.02 -0.00 -0.04 0.04 1460.97 1.00
Rt_transformed_rw_diffs[3] -0.00 0.02 -0.00 -0.04 0.04 1669.85 1.00
Rt_transformed_rw_diffs[4] -0.00 0.02 -0.00 -0.04 0.04 1667.25 1.00
Rt_transformed_rw_diffs[5] 0.00 0.03 0.00 -0.05 0.04 1702.68 1.00
Rt_transformed_rw_diffs[6] -0.00 0.02 -0.00 -0.04 0.04 1558.87 1.00
Rt_transformed_rw_diffs[7] -0.00 0.02 -0.00 -0.04 0.04 2296.40 1.00
Rt_transformed_rw_diffs[8] -0.00 0.02 -0.00 -0.04 0.04 1850.65 1.00
Rt_transformed_rw_diffs[9] 0.00 0.02 0.00 -0.04 0.03 1460.40 1.00
Rt_transformed_rw_diffs[10] -0.00 0.02 0.00 -0.04 0.04 2055.47 1.00
Rt_transformed_rw_diffs[11] -0.00 0.03 0.00 -0.04 0.04 1332.18 1.00
Rt_transformed_rw_diffs[12] 0.00 0.02 0.00 -0.04 0.04 2042.44 1.00
Rt_transformed_rw_diffs[13] -0.00 0.03 -0.00 -0.04 0.04 1278.69 1.00
Rt_transformed_rw_diffs[14] -0.00 0.03 -0.00 -0.04 0.04 1777.71 1.00
Rt_transformed_rw_diffs[15] 0.00 0.03 0.00 -0.04 0.04 1683.29 1.00
Rt_transformed_rw_diffs[16] -0.00 0.02 -0.00 -0.03 0.04 1383.06 1.00
Rt_transformed_rw_diffs[17] -0.00 0.03 -0.00 -0.04 0.04 1581.60 1.00
Rt_transformed_rw_diffs[18] 0.00 0.03 0.00 -0.04 0.04 1576.48 1.00
Rt_transformed_rw_diffs[19] 0.00 0.03 0.00 -0.04 0.04 2169.46 1.00
Rt_transformed_rw_diffs[20] -0.00 0.02 -0.00 -0.04 0.04 2041.61 1.00
Rt_transformed_rw_diffs[21] 0.00 0.02 0.00 -0.03 0.05 1861.29 1.00
Rt_transformed_rw_diffs[22] 0.00 0.03 -0.00 -0.04 0.04 1796.97 1.00
Rt_transformed_rw_diffs[23] -0.00 0.02 0.00 -0.04 0.04 1542.73 1.00
Rt_transformed_rw_diffs[24] 0.00 0.03 0.00 -0.04 0.04 1625.01 1.00
Rt_transformed_rw_diffs[25] -0.00 0.02 -0.00 -0.05 0.04 1711.34 1.00
Rt_transformed_rw_diffs[26] 0.00 0.03 0.00 -0.04 0.04 1496.53 1.00
Rt_transformed_rw_diffs[27] -0.00 0.03 -0.00 -0.05 0.04 1411.17 1.00
Rt_transformed_rw_diffs[28] -0.00 0.02 0.00 -0.04 0.04 1478.24 1.00
Rt_transformed_rw_diffs[29] -0.00 0.03 -0.00 -0.04 0.04 1557.55 1.00

Number of divergences: 0

Expand Down
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