try alternate approach

CDCgov · Nov 14, 2024 · 3d7ff3c · 3d7ff3c
1 parent f16eecf
commit 3d7ff3c
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Showing 3 changed files with 102 additions and 5 deletions.
diff --git a/.github/workflows/benchmark.yaml b/.github/workflows/benchmark.yaml
@@ -21,11 +21,7 @@ jobs:
       - name: Install dependencies
         run: |
           julia --project=benchmark -e 'using Pkg;
-          Pkg.rm("EpiAware");
-          Pkg.add(url="https://github.com/SamuelBrand1/BenchmarkCI.jl");
-          Pkg.resolve();
           Pkg.instantiate();
-          Pkg.develop(path = "./EpiAware");
           Pkg.update()'
       - name: Run benchmarks
         run: julia --project=benchmark -e 'using BenchmarkCI; BenchmarkCI.judge(; baseline = "origin/main", retune = false)'

diff --git a/benchmark/Manifest.toml b/benchmark/Manifest.toml
@@ -2,7 +2,7 @@
 
 julia_version = "1.11.1"
 manifest_format = "2.0"
-project_hash = "64eb345299a47caab1773ea177cabee4689fe721"
+project_hash = "9fb2e9db0221fb4b8d0c098c0ecdd8e5e0675214"
 
 [[deps.ADTypes]]
 git-tree-sha1 = "eea5d80188827b35333801ef97a40c2ed653b081"
@@ -242,6 +242,14 @@ git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e"
 uuid = "9718e550-a3fa-408a-8086-8db961cd8217"
 version = "0.1.1"
 
+[[deps.BenchmarkCI]]
+deps = ["Base64", "BenchmarkTools", "CpuId", "Dates", "GitHub", "JSON", "LinearAlgebra", "Logging", "Markdown", "Pkg", "PkgBenchmark", "Setfield", "Tar", "UnPack", "Zstd_jll"]
+git-tree-sha1 = "06368d9c0aa5174e85b3ef4b506e3c84df2038d2"
+repo-rev = "master"
+repo-url = "https://github.com/SamuelBrand1/BenchmarkCI.jl"
+uuid = "20533458-34a3-403d-a444-e18f38190b5b"
+version = "0.1.10-DEV"
+
 [[deps.BenchmarkTools]]
 deps = ["JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"]
 git-tree-sha1 = "f1dff6729bc61f4d49e140da1af55dcd1ac97b2f"
@@ -279,6 +287,11 @@ version = "0.13.18"
     Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c"
     Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"
 
+[[deps.BitFlags]]
+git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d"
+uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35"
+version = "0.1.9"
+
 [[deps.CEnum]]
 git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc"
 uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82"
@@ -316,6 +329,12 @@ weakdeps = ["InverseFunctions", "Test"]
     ChangesOfVariablesInverseFunctionsExt = "InverseFunctions"
     ChangesOfVariablesTestExt = "Test"
 
+[[deps.CodecZlib]]
+deps = ["TranscodingStreams", "Zlib_jll"]
+git-tree-sha1 = "bce6804e5e6044c6daab27bb533d1295e4a2e759"
+uuid = "944b1d66-785c-5afd-91f1-9de20f533193"
+version = "0.7.6"
+
 [[deps.Combinatorics]]
 git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860"
 uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa"
@@ -366,6 +385,12 @@ weakdeps = ["InverseFunctions"]
     [deps.CompositionsBase.extensions]
     CompositionsBaseInverseFunctionsExt = "InverseFunctions"
 
+[[deps.ConcurrentUtilities]]
+deps = ["Serialization", "Sockets"]
+git-tree-sha1 = "ea32b83ca4fefa1768dc84e504cc0a94fb1ab8d1"
+uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb"
+version = "2.4.2"
+
 [[deps.ConsoleProgressMonitor]]
 deps = ["Logging", "ProgressMeter"]
 git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8"
@@ -383,6 +408,12 @@ weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"]
     ConstructionBaseLinearAlgebraExt = "LinearAlgebra"
     ConstructionBaseStaticArraysExt = "StaticArrays"
 
+[[deps.CpuId]]
+deps = ["Markdown"]
+git-tree-sha1 = "fcbb72b032692610bfbdb15018ac16a36cf2e406"
+uuid = "adafc99b-e345-5852-983c-f28acb93d879"
+version = "0.3.1"
+
 [[deps.Crayons]]
 git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15"
 uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f"
@@ -571,6 +602,12 @@ path = "../EpiAware"
 uuid = "b2eeebe4-5992-4301-9193-7ebc9f62c855"
 version = "0.1.0-DEV"
 
+[[deps.ExceptionUnwrapping]]
+deps = ["Test"]
+git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a"
+uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4"
+version = "0.1.10"
+
 [[deps.ExprTools]]
 git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec"
 uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04"
@@ -694,12 +731,24 @@ git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950"
 uuid = "46192b85-c4d5-4398-a991-12ede77f4527"
 version = "0.1.6"
 
+[[deps.GitHub]]
+deps = ["Base64", "Dates", "HTTP", "JSON", "MbedTLS", "Sockets", "SodiumSeal", "URIs"]
+git-tree-sha1 = "7ee730a8484d673a8ce21d8536acfe6494475994"
+uuid = "bc5e4493-9b4d-5f90-b8aa-2b2bcaad7a26"
+version = "5.9.0"
+
 [[deps.Graphs]]
 deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"]
 git-tree-sha1 = "1dc470db8b1131cfc7fb4c115de89fe391b9e780"
 uuid = "86223c79-3864-5bf0-83f7-82e725a168b6"
 version = "1.12.0"
 
+[[deps.HTTP]]
+deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"]
+git-tree-sha1 = "1336e07ba2eb75614c99496501a8f4b233e9fafe"
+uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3"
+version = "1.10.10"
+
 [[deps.HybridArrays]]
 deps = ["LinearAlgebra", "Requires", "StaticArrays"]
 git-tree-sha1 = "6c3e57bc26728b99f470b267a437f0d380eac4fc"
@@ -1161,6 +1210,12 @@ git-tree-sha1 = "f765b4eda3ea9be8e644b9127809ca5151f3d9ea"
 uuid = "99c1a7ee-ab34-5fd5-8076-27c950a045f4"
 version = "2.4.2"
 
+[[deps.MbedTLS]]
+deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"]
+git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf"
+uuid = "739be429-bea8-5141-9913-cc70e7f3736d"
+version = "1.1.9"
+
 [[deps.MbedTLS_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1"
@@ -1285,6 +1340,18 @@ deps = ["Artifacts", "Libdl"]
 uuid = "05823500-19ac-5b8b-9628-191a04bc5112"
 version = "0.8.1+2"
 
+[[deps.OpenSSL]]
+deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"]
+git-tree-sha1 = "38cb508d080d21dc1128f7fb04f20387ed4c0af4"
+uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c"
+version = "1.4.3"
+
+[[deps.OpenSSL_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl"]
+git-tree-sha1 = "7493f61f55a6cce7325f197443aa80d32554ba10"
+uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95"
+version = "3.0.15+1"
+
 [[deps.OpenSpecFun_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1"
@@ -1725,6 +1792,11 @@ deps = ["Distributed", "Mmap", "Random", "Serialization"]
 uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383"
 version = "1.11.0"
 
+[[deps.SimpleBufferStream]]
+git-tree-sha1 = "f305871d2f381d21527c770d4788c06c097c9bc1"
+uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7"
+version = "1.2.0"
+
 [[deps.SimpleTraits]]
 deps = ["InteractiveUtils", "MacroTools"]
 git-tree-sha1 = "5d7e3f4e11935503d3ecaf7186eac40602e7d231"
@@ -1746,6 +1818,12 @@ version = "1.4.0"
 uuid = "6462fe0b-24de-5631-8697-dd941f90decc"
 version = "1.11.0"
 
+[[deps.SodiumSeal]]
+deps = ["Base64", "Libdl", "libsodium_jll"]
+git-tree-sha1 = "80cef67d2953e33935b41c6ab0a178b9987b1c99"
+uuid = "2133526b-2bfb-4018-ac12-889fb3908a75"
+version = "0.1.1"
+
 [[deps.SortingAlgorithms]]
 deps = ["DataStructures"]
 git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085"
@@ -1982,6 +2060,11 @@ weakdeps = ["PDMats"]
     [deps.Tracker.extensions]
     TrackerPDMatsExt = "PDMats"
 
+[[deps.TranscodingStreams]]
+git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742"
+uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
+version = "0.11.3"
+
 [[deps.Transducers]]
 deps = ["Accessors", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "SplittablesBase", "Tables"]
 git-tree-sha1 = "7deeab4ff96b85c5f72c824cae53a1398da3d1cb"
@@ -2030,6 +2113,11 @@ version = "0.5.5"
     [deps.TuringBenchmarking.weakdeps]
     BridgeStan = "c88b6f0a-829e-4b0b-94b7-f06ab5908f5a"
 
+[[deps.URIs]]
+git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b"
+uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4"
+version = "1.5.1"
+
 [[deps.UUIDs]]
 deps = ["Random", "SHA"]
 uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"
@@ -2083,6 +2171,12 @@ deps = ["Libdl"]
 uuid = "83775a58-1f1d-513f-b197-d71354ab007a"
 version = "1.2.13+1"
 
+[[deps.Zstd_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl"]
+git-tree-sha1 = "555d1076590a6cc2fdee2ef1469451f872d8b41b"
+uuid = "3161d3a3-bdf6-5164-811a-617609db77b4"
+version = "1.5.6+1"
+
 [[deps.Zygote]]
 deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"]
 git-tree-sha1 = "c7dc3148a64d1cd3768c29b3db5972d1c302661b"
@@ -2110,6 +2204,12 @@ deps = ["Artifacts", "Libdl"]
 uuid = "8e850b90-86db-534c-a0d3-1478176c7d93"
 version = "5.11.0+0"
 
+[[deps.libsodium_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "f76d682d87eefadd3f165d8d9fda436464213142"
+uuid = "a9144af2-ca23-56d9-984f-0d03f7b5ccf8"
+version = "1.0.20+1"
+
 [[deps.nghttp2_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"

diff --git a/benchmark/Project.toml b/benchmark/Project.toml
@@ -1,4 +1,5 @@
 [deps]
+BenchmarkCI = "20533458-34a3-403d-a444-e18f38190b5b"
 BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf"
 Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f"
 DynamicPPL = "366bfd00-2699-11ea-058f-f148b4cae6d8"