Merge pull request #21 from CDCgov/issue3

.github workflows CI

.github/workflows/branch.yml

@@ -1,4 +1,4 @@
-name: nf-core branch protection
+name: CDCgov branch protection
 # This workflow is triggered on PRs to master branch on the repository
 # It fails when someone tries to make a PR against the nf-core `master` branch instead of `dev`
 on:
@@ -11,9 +11,9 @@ jobs:
     steps:
       # PRs to the nf-core repo master branch are only ok if coming from the nf-core repo `dev` or any `patch` branches
       - name: Check PRs
-        if: github.repository == 'nf-core/mpxvassembly'
+        if: github.repository == 'CDCgov/polkapox'
         run: |
-          { [[ ${{github.event.pull_request.head.repo.full_name }} == nf-core/mpxvassembly ]] && [[ $GITHUB_HEAD_REF = "dev" ]]; } || [[ $GITHUB_HEAD_REF == "patch" ]]
+          { [[ ${{github.event.pull_request.head.repo.full_name }} == CDCgov/polkapox ]] && [[ $GITHUB_HEAD_REF = "dev" ]]; } || [[ $GITHUB_HEAD_REF == "patch" ]]
 
       # If the above check failed, post a comment on the PR explaining the failure
       # NOTE - this doesn't currently work if the PR is coming from a fork, due to limitations in GitHub actions secrets

.github/workflows/ci.yml

@@ -1,4 +1,4 @@
-name: nf-core CI
+name: CDCgov CI
 # This workflow runs the pipeline with the minimal test dataset to check that it completes without any syntax errors
 on:
   push:
@@ -15,8 +15,8 @@ env:
 jobs:
   test:
     name: Run pipeline with test data
-    # Only run on push if this is the nf-core dev branch (merged PRs)
-    if: "${{ github.event_name != 'push' || (github.event_name == 'push' && github.repository == 'nf-core/mpxvassembly') }}"
+    # Only run on push if this is the dev branch (merged PRs)
+    if: "${{ github.event_name != 'push' || (github.event_name == 'push' && github.repository == 'CDCgov/polkapox/') }}"
     runs-on: ubuntu-latest
     strategy:
       matrix: