Skip to content

Issues: CDPHE-bioinformatics/CDPHE-SARS-CoV-2

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

15 Open 18 Closed
15 Open 18 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

[BUG] Inconsistent scrubbed fastq folder names bug Something isn't working
#77 opened Nov 6, 2024 by arianna-smith
@sam-baird
[REQUEST] Use BED file as input to Medaka for primer trimming
#75 opened Nov 4, 2024 by sam-baird
@sam-baird
1
[BUG/REQUEST] Update Artic to 1.4.1 for minor bug fix bug Something isn't working
#71 opened Oct 31, 2024 by arianna-smith
[REQUEST] Do not overwrite existing files by default
#68 opened Oct 30, 2024 by sam-baird
@sam-baird
2
[REQUEST] samtools depth -aJ
#41 opened Sep 18, 2024 by molly-hetheringtonrauth Whimsical Waffle 🧇
1
Switch from medaka to dorado
#40 opened Sep 18, 2024 by danpolanco
[FEATURE] S gene coverage requirement
#39 opened Sep 18, 2024 by molly-hetheringtonrauth
@sam-baird
2
[REQUEST] Change sample-level workflows to set level and call downstream workflows as subworkflows
#38 opened Sep 4, 2024 by arianna-smith Ethereal Espresso☕
@arianna-smith
1
[REQUEST] Add version number as subfolder of terra_outputs effort - medium enhancement New feature or request priority - high
#35 opened Jul 31, 2024 by arianna-smith
2 tasks
Ethereal Espresso☕
@arianna-smith
Invalid escape sequence in newer versions of python bug Something isn't working effort - low priority - low
#31 opened Jun 7, 2024 by danpolanco Whimsical Waffle 🧇
@danpolanco
1
[FEATURE] Remove unused data fields in summary results file effort - medium priority - low
#30 opened Jun 6, 2024 by molly-hetheringtonrauth Whimsical Waffle 🧇
1
[FEATURE] Version capture consistency across workflows
#29 opened May 20, 2024 by molly-hetheringtonrauth Ethereal Espresso☕
@arianna-smith
2
Rename WDL tasks to be more specific, standardized, or otherwise improved effort - low enhancement New feature or request priority - low question Further information is requested
#22 opened Apr 12, 2024 by danpolanco Whimsical Waffle 🧇
3
Update to Nextclade v3 and deprecate parser effort - medium enhancement New feature or request priority - low
#18 opened Mar 15, 2024 by molly-hetheringtonrauth Whimsical Waffle 🧇
@danpolanco @molly-hetheringtonrauth
2
Right size obvious tasks to alleviate resource exhaustion from CPU quota effort - medium enhancement New feature or request priority - low
#10 opened Jan 23, 2024 by danpolanco Whimsical Waffle 🧇
1
ProTip! What’s not been updated in a month: updated:<2024-10-09.