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Update documentation and examples #417

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Run time

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Job	Run time
lint	1m 35s
test-numba (3.10)	8m 40s
graph	1m 52s
test-numba (3.11)	9m 10s
cloc	8s
test-numba (3.12)	8m 29s
test-python (3.10)	8m 28s
test-numba (3.13)	9m 57s
test-python (3.11)	7m 56s
test-python (3.12)	8m 19s
test-python (3.13)	8m 37s
	1h 13m 11s