Merge pull request #213 from CHOP-CGTInformatics/fix-record-id-bug #663
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| NOT_CRAN: true | |
| R_KEEP_PKG_SOURCE: yes | |
| REDCAP_URI: ${{ secrets.REDCAP_URI }} | |
| REDCAPTIDIER_CLASSIC_API: ${{ secrets.REDCAPTIDIER_CLASSIC_API }} | |
| REDCAPTIDIER_LONGITUDINAL_API: ${{ secrets.REDCAPTIDIER_LONGITUDINAL_API }} | |
| REDCAPTIDIER_LONGITUDINAL_NOARMS_API: ${{ secrets.REDCAPTIDIER_LONGITUDINAL_NOARMS_API }} | |
| SUPERHEROES_REDCAP_API: ${{ secrets.SUPERHEROES_REDCAP_API }} | |
| REDCAPTIDIER_RESTRICTED_ACCESS_API: ${{ secrets.REDCAPTIDIER_RESTRICTED_ACCESS_API }} | |
| REDCAPTIDIER_CLASSIC_NOREPEAT_API: ${{ secrets.REDCAPTIDIER_CLASSIC_NOREPEAT_API }} | |
| REDCAPTIDIER_LONGITUDINAL_NOREPEAT_API: ${{ secrets.REDCAPTIDIER_LONGITUDINAL_NOREPEAT_API }} | |
| REDCAPTIDIER_REPEAT_FIRST_INSTRUMENT_API: ${{ secrets.REDCAPTIDIER_REPEAT_FIRST_INSTRUMENT_API }} | |
| REDCAPTIDIER_DEEP_DIVE_VIGNETTE_API: ${{ secrets.REDCAPTIDIER_DEEP_DIVE_VIGNETTE_API }} | |
| REDCAPTIDIER_REPEATING_EVENT_API: ${{ secrets.REDCAPTIDIER_REPEATING_EVENT_API }} | |
| REDCAPTIDIER_LARGE_SPARSE_API: ${{ secrets.REDCAPTIDIER_LARGE_SPARSE_API }} | |
| REDCAPTIDIER_DAG_API: ${{ secrets.REDCAPTIDIER_DAG_API }} | |
| REDCAPTIDIER_LONGITUDINAL_DAG_API: ${{ secrets.REDCAPTIDIER_LONGITUDINAL_DAG_API }} | |
| REDCAPTIDIER_MIXED_STRUCTURE_API: ${{ secrets.REDCAPTIDIER_MIXED_STRUCTURE_API }} | |
| REDCAPTIDIER_MDC_API: ${{ secrets.REDCAPTIDIER_MDC_API }} | |
| steps: | |
| - name: Update Ubuntu, Install cURL Headers, add Libraries | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libcurl4-openssl-dev | |
| sudo apt-get install libharfbuzz-dev libfribidi-dev libfontconfig1-dev | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - name: Install pak dependency | |
| run: | | |
| install.packages("pak") | |
| shell: Rscript {0} | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::rcmdcheck | |
| needs: check | |
| - uses: r-lib/actions/check-r-package@v2 | |
| with: | |
| args: 'c("--no-manual", "--as-cran")' | |
| error-on: '"error"' | |
| check-dir: '"check"' | |
| upload-snapshots: true |