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Richard Hanna
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Richard Hanna
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Mar 27, 2024
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,157 @@ | ||
| #' --- | ||
| #' output: reprex::reprex_document | ||
| #' --- | ||
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| devtools::load_all() | ||
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| options(rlang_backtrace_on_error_report = "none") | ||
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| # read_redcap | ||
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| classic_token <- Sys.getenv("REDCAPTIDIER_CLASSIC_API") | ||
| longitudinal_token <- Sys.getenv("REDCAPTIDIER_LONGITUDINAL_API") | ||
| redcap_uri <- Sys.getenv("REDCAP_URI") | ||
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| ## args missing | ||
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| # read_redcap() | ||
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| # read_redcap(redcap_uri) | ||
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| # read_redcap(token = classic_token) | ||
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| ## redcap_uri | ||
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| read_redcap(123, classic_token) | ||
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| read_redcap(letters[1:3], classic_token) | ||
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| read_redcap("https://www.google.com", classic_token) | ||
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| read_redcap("https://www.google.comm", classic_token) | ||
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| ## token | ||
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| read_redcap(redcap_uri, 123) | ||
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| read_redcap(redcap_uri, letters[1:3]) | ||
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| read_redcap(redcap_uri, "") | ||
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| read_redcap(redcap_uri, "CC0CE44238EF65C5DA26A55DD749AF7") # 31 hex characters | ||
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| read_redcap(redcap_uri, "CC0CE44238EF65C5DA26A55DD749AF7A") # will be rejected by server | ||
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| ## unexpected REDCapR error | ||
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| try_redcapr(list(success = FALSE, status_code = "", outcome_message = "This is an error message from REDCapR!")) | ||
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| ## raw_or_label | ||
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| read_redcap(redcap_uri, classic_token, raw_or_label = "bad option") | ||
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| ## forms | ||
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| read_redcap(redcap_uri, classic_token, forms = 123) | ||
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| ## export_survey_fields | ||
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| read_redcap(redcap_uri, classic_token, export_survey_fields = 123) | ||
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| read_redcap(redcap_uri, classic_token, export_survey_fields = c(TRUE, TRUE)) | ||
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| ## suppress_redcapr_messages | ||
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| read_redcap(redcap_uri, classic_token, suppress_redcapr_messages = 123) | ||
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| read_redcap(redcap_uri, classic_token, suppress_redcapr_messages = c(TRUE, TRUE)) | ||
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| # data access groups | ||
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| read_redcap(redcap_uri, classic_token, export_data_access_groups = TRUE) | ||
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| # surveys | ||
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| read_redcap(redcap_uri, longitudinal_token, export_survey_fields = TRUE) | ||
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| # bind_tibbles | ||
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| bind_tibbles(123) | ||
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| supertbl <- tibble(redcap_data = list()) | ||
| bind_tibbles(supertbl, environment = "abc") | ||
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| bind_tibbles(supertbl, tbls = 123) | ||
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| # extract_tibbles | ||
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| extract_tibbles(letters[1:10]) | ||
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| # extract_tibble | ||
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| extract_tibble(123, "my_tibble") | ||
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| supertbl <- tibble(redcap_data = list()) %>% | ||
| as_supertbl() | ||
| extract_tibble(supertbl, tbl = 123) | ||
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| extract_tibble(supertbl, tbl = letters[1:3]) | ||
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| # make_labelled | ||
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| make_labelled(123) | ||
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| missing_col_supertbl <- tibble(redcap_data = list()) %>% | ||
| as_supertbl() | ||
| make_labelled(missing_col_supertbl) | ||
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| missing_list_col_supertbl <- tibble(redcap_data = list(), redcap_metadata = 123) %>% | ||
| as_supertbl() | ||
| make_labelled(missing_list_col_supertbl) | ||
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| # add_skimr_metadata | ||
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| mtcars %>% add_skimr_metadata() | ||
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| # write_redcap_xlsx | ||
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| withr::with_tempdir({ | ||
| dir <- getwd() | ||
| filepath <- paste0(dir, "/temp.csv") | ||
| REDCapTidieR:::check_file_exists(file = filepath, overwrite = FALSE) | ||
| }) | ||
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| withr::with_tempdir({ | ||
| dir <- getwd() | ||
| tempfile <- write.csv(x = mtcars, file = "temp.csv") | ||
| filepath <- paste0(dir, "/temp.csv") | ||
| REDCapTidieR:::check_file_exists(file = filepath, overwrite = FALSE) | ||
| }) | ||
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| write_redcap_xlsx(mtcars, file = "temp.xlsx") | ||
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| read_redcap(redcap_uri, classic_token) %>% | ||
| write_redcap_xlsx(file = "temp.xlsx", add_labelled_column_headers = TRUE) | ||
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| withr::with_tempdir({ | ||
| dir <- getwd() | ||
| filepath <- paste0(dir, "/temp.pdf") | ||
| read_redcap(redcap_uri, longitudinal_token) %>% | ||
| write_redcap_xlsx(file = filepath) | ||
| }) | ||
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| withr::with_tempdir({ | ||
| dir <- getwd() | ||
| filepath <- paste0(dir, "/temp") | ||
| read_redcap(redcap_uri, longitudinal_token) %>% | ||
| write_redcap_xlsx(file = filepath) | ||
| }) | ||
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| # Printed supertibble | ||
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| read_redcap(Sys.getenv("REDCAP_URI"), Sys.getenv("REDCAPTIDIER_CLASSIC_API")) %>% | ||
| suppressWarnings() | ||
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| # missing data codes | ||
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| read_redcap(redcap_uri, Sys.getenv("REDCAPTIDIER_MDC_API")) |
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