Add covr code coverage

.github/workflows/test-coverage.yaml

@@ -0,0 +1,40 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+
+name: test-coverage
+
+jobs:
+  test-coverage:
+    runs-on: ubuntu-latest
+    env:
+      NOT_CRAN: true
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      REDCAP_URI: ${{ secrets.REDCAP_URI }}
+      SUPERHEROES_REDCAP_API: ${{ secrets.SUPERHEROES_REDCAP_API }}
+      REDCAPTIDIER_CLASSIC_API: ${{ secrets.REDCAPTIDIER_CLASSIC_API }}
+      REDCAPTIDIER_CLASSIC_NOREPEAT_API: ${{ secrets.REDCAPTIDIER_CLASSIC_NOREPEAT_API }}
+      REDCAPTIDIER_LONGITUDINAL_API: ${{ secrets.REDCAPTIDIER_LONGITUDINAL_API }}
+      REDCAPTIDIER_LONGITUDINAL_NOREPEAT_API: ${{ secrets.REDCAPTIDIER_LONGITUDINAL_NOREPEAT_API }}
+      REDCAPTIDIER_LONGITUDINAL_NOARMS_API: ${{ secrets.REDCAPTIDIER_LONGITUDINAL_NOARMS_API }}
+      R_KEEP_PKG_SOURCE: yes
+
+    steps:
+      - uses: actions/checkout@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::covr
+          needs: coverage
+
+      - name: Test coverage
+        run: covr::codecov(quiet = FALSE)
+        shell: Rscript {0}

DESCRIPTION

@@ -26,6 +26,7 @@ URL: https://github.com/CHOP-CGTDataOps/REDCapTidieR,
     https://chop-cgtdataops.github.io/REDCapTidieR/
 BugReports: https://github.com/CHOP-CGTDataOps/REDCapTidieR/issues
 Suggests: 
+    covr,
     knitr,
     rmarkdown,
     testthat (>= 3.0.0)

README.Rmd

@@ -26,6 +26,7 @@ knitr::opts_chunk$set(
  [![R-CMD-check](https://github.com/CHOP-CGTDataOps/REDCapTidieR/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/CHOP-CGTDataOps/REDCapTidieR/actions/workflows/R-CMD-check.yaml)
 [![CRAN status](https://www.r-pkg.org/badges/version/REDCapTidieR)](https://CRAN.R-project.org/package=REDCapTidieR)
 [![](https://cranlogs.r-pkg.org/badges/grand-total/REDCapTidieR)](https://cran.r-project.org/package=REDCapTidieR)
+[![Codecov test coverage](https://codecov.io/gh/CHOP-CGTDataOps/REDCapTidieR/branch/main/graph/badge.svg)](https://app.codecov.io/gh/CHOP-CGTDataOps/REDCapTidieR?branch=main)
 <!-- badges: end -->
 
 The {REDCapTidieR} package provides an elegant way to import data from a [REDCap](https://www.project-redcap.org/) database into an R environment. It builds upon the [{REDCapR}](https://ouhscbbmc.github.io/REDCapR/) package to query the REDCap API and then transforms the returned data into a set of tidy tibbles.

README.md

@@ -16,6 +16,8 @@ experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](h
 [![CRAN
 status](https://www.r-pkg.org/badges/version/REDCapTidieR)](https://CRAN.R-project.org/package=REDCapTidieR)
 [![](https://cranlogs.r-pkg.org/badges/grand-total/REDCapTidieR)](https://cran.r-project.org/package=REDCapTidieR)
+[![Codecov test
+coverage](https://codecov.io/gh/CHOP-CGTDataOps/REDCapTidieR/branch/main/graph/badge.svg)](https://app.codecov.io/gh/CHOP-CGTDataOps/REDCapTidieR?branch=main)
 <!-- badges: end -->
 
 The {REDCapTidieR} package provides an elegant way to import data from a

codecov.yml

@@ -0,0 +1,14 @@
+comment: false
+
+coverage:
+  status:
+    project:
+      default:
+        target: auto
+        threshold: 1%
+        informational: true
+    patch:
+      default:
+        target: auto
+        threshold: 1%
+        informational: true