Skip to content

Releases: CHOP-CGTInformatics/REDCapTidieR

v1.2.1

10 Dec 14:06
Compare
Choose a tag to compare

What's Changed

  • Add factor levels to redcap_events col by @rsh52 in #211
  • Fix failure when forms is used for projects with a stand-alone record id instrument by @ezraporter in #213

Full Changelog: v1.2.0...v1.2.1

v1.2.0

23 Oct 22:50
33d95e4
Compare
Choose a tag to compare

What's Changed

  • combine_checkboxes by @rsh52 in #196
  • Update documentation, add example by @rsh52 in #198
  • Mixed Structure Data Loss Bug Resolution by @rsh52 in #201
  • Update REDCapR to 1.2.0, update guess_max to Inf by @rsh52 in #202
  • Update link_arms, Add event_name to redcap_events Output in Longitudinal Supertibbles by @rsh52 in #203
  • Proposal: a vignette about labelled vectors by @larmarange in #208
  • Missing Data Fix, Partial Keys Fix by @rsh52 in #205
  • CRAN 1.2 Prep by @rsh52 in #209

New Contributors

Full Changelog: v1.1.1...v1.2.0

v1.1.1

18 Apr 15:26
Compare
Choose a tag to compare

What's Changed

Full Changelog: v1.1.0...v1.1.1

v1.1.0

28 Mar 12:23
Compare
Choose a tag to compare

What's Changed

New Contributors

Full Changelog: v1.0.0-joss...v1.1.0

v1.0.0-joss

14 Feb 17:00
61c7b8d
Compare
Choose a tag to compare

What's Changed

Full Changelog: v1.0.0...v1.0.0-joss

Version of REDCapTidieR as accepted by JOSS

Release v1.0.0

08 Nov 18:52
Compare
Choose a tag to compare

Version 1.0.0 (Released 2023-11-08)

This package has been considered stable for months now with no new issues reported, and so should be reflected in the major version number.

Minor Updates

  • Updated openxlsx2 API calls to coincide with v1.0
  • Internal cleaning and tidying of documentation
  • pkgdown site updates
  • Migration of some vignettes over to articles

Release v0.4.1

15 Aug 19:30
Compare
Choose a tag to compare

Version 0.4.1 (Released 2023-08-15)

Miscellaneous

  • Updated test suite to be compatible with REDCapR 1.2.0

Release v0.4.0

04 Jun 13:11
Compare
Choose a tag to compare

Version 0.4.0 (Released 2023-06-04)

New Features

  • New function add_skimr_metadata() added allowing for summary statistics to be added to supertibble metadata
  • New function write_redcap_xlsx() added allowing users to export supertibbles to XLSX format
  • read_redcap() now supports Data Access Groups (DAGs)
    • New argument available to read_redcap(): export_data_access_groups

Bug Fixes

  • Fixed a bug where REDCapR API error messages weren't being returned from REDCapTidieR

Miscellaneous

  • All deprecated functions have been officially retired and removed from the package

Release v0.3.0

18 Mar 13:51
Compare
Choose a tag to compare

Version 0.3.0 (Released 2023-03-17)

New Features

  • read_redcap() now supports projects with repeating events which introduced a breaking change to data tibble column names
    • redcap_repeat_instance is now redcap_form_instance
    • redcap_event_instance has been added to denote repeating events

Performance Improvements and Enhancements

  • Improved error message suite:
    • Helpful error message provided for various conditions related to REDCap API calls
    • Helpful error messages added for checks across all exported functions
    • Unexpected error messages provided with direction to submitting bug reports
      • Improved error messages for label parsing
    • Added select_choices_and_calculations exported by the REDCap API to redcap_metadata tibble
  • Improved process for adding/updating httptest mocks

Bug Fixes

  • Fixed a bug where the suppress_redcapr_messages argument for read_redcap() was not working appropriately
  • Fixed a bug where read_redcap() would fail when select_choices_and_calculations was missing whitespace after commas (discovered by @camcaan)
  • Fixed a bug where read_redcap() would fail for projects with a multiple choice field having duplicate values with the same label
    • Added a warning when REDCapTidieR detects this
  • Fixed a bug where empty rows would appear in data tibbles in longitudinal REDCap exports for events containing a mix of empty and filled forms
  • Fixed a bug where the forms specification in read_redcap() may lead to incorrect removal of data for databases with repeating events

Release v0.2.0

08 Dec 12:31
Compare
Choose a tag to compare

Version 0.2.0 (Released 2022-12-07)

New Features

  • Function name changes:
    • read_redcap_tidy() is now read_redcap()
    • extract_table() is now extract_tibble()
    • extract_tables() is now extract_tibbles()
    • bind_table() is now bind_tibbles()
      • All old functions are still supported and throw a deprecation warning
  • Instrument/form-level metadata included in supertibble output:
    • redcap_form_label: The instrumentโ€™s human-readable label
    • redcap_metadata: REDCap metadata associated with the instrument (derived from REDCapR::redcap_metadata_read())
    • redcap_events: Events and arms associated with this instrument (for longitudinal projects only)
    • data_rows, data_cols: Row and column counts of redcap_data
    • data_size: Size of the redcap_data tibble in memory
    • data_na_pct: The percentage of missing data in the redcap_data tibble
  • New make_labelled() function that attaches variable labels using the labelled package
  • New arguments available read_redcap():
    • forms: Allows reading specific instruments instead of the whole project
    • export_survey_fields: Allows for export of redcap_survey_timestamp and redcap_survey_identifier columns from survey-enabled REDCap instruments (TRUE by default)

Performance Improvements and Enhancements

  • Improved execution time by >2.5X by optimizing internal functions check_repeat_and_nonrepeat(), distill_*_table_long(), and multi_choice_to_labels()
  • New informative warning and error messages, now rendered using the cli package
  • Tests and vignettes now use httptest to mock and cache REDCap API calls
  • Implemented GitHub Actions link check
  • Replaced deprecated .data pronoun in tidyselect expressions

Bug Fixes

  • Fixed a bug in which similarly named variables could be duplicated under some circumstances
  • Order of instruments in the supertibble is now the same as the order of instruments in REDCap
  • Fixed an issue in which extract_*() functions under some circumstances returned NULL instead of the expected tibbles