Skip to content

better citation info in docs (#187) #903

better citation info in docs (#187)

better citation info in docs (#187) #903

Workflow file for this run

name: Testing
on:
push:
branches:
- '**'
- '!joss-paper'
jobs:
formatting:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
- uses: psf/black@stable
with:
src: "./regional_mom6 ./tests"
testing:
needs: formatting
runs-on: ubuntu-latest
container: ghcr.io/cosima/regional-test-env:updated
defaults:
run:
shell: bash -el {0}
strategy:
matrix:
python-version: ["3.9", "3.10", "3.12"]
steps:
- uses: actions/checkout@v3
- name: Set up Python ${{ matrix.python-version }}
uses: conda-incubator/setup-miniconda@v2
with:
miniconda-version: "latest"
auto-update-conda: true
auto-activate-base: false
environment-file: environment-ci.yml
python-version: ${{ matrix.python-version }}
- name: Install from source
run: |
python -m pip install .
- name: Install pytest
run: |
python -m pip install pytest pytest-cov nbval
- name: Test with pytest
run: |
if [[ "${{ matrix.python-version }}" == "3.10" ]]; then
python -m pytest -v --doctest-modules --cov=regional_mom6 --cov-report=xml tests/ regional_mom6/
else
python -m pytest -v --doctest-modules tests/ regional_mom6/
fi
- name: Test the example notebook
run: |
ln -s /data demos/PATH_TO_GLORYS_DATA
ln -s /data demos/PATH_TO_GEBCO_FILE
ln -s /build/FRE-NCtools/tools demos/PATH_TO_FRE_TOOLS
python -m pytest --nbval demos/reanalysis-forced.ipynb --nbval-current-env --cov=regional_mom6 --cov-report=xml tests/
- name: Upload coverage to Codecov
uses: codecov/codecov-action@v3
if: ${{ matrix.python-version == '3.10' }}
with:
token: ${{ secrets.CODECOV_TOKEN }}
directory: ./coverage/reports/
env_vars: OS,PYTHON
files: ./coverage.xml
name: codecov-umbrella