Merge pull request #34 from CRI-iAtlas/add_notebook_links

Add link to notebooks on querying the database.
CRI-iAtlas · Dec 4, 2023 · ee60561 · ee60561
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diff --git a/inst/markdown/cohort_selection1.markdown b/inst/markdown/cohort_selection1.markdown
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 Use this module to create your own custom cohort and to specify how cancer genomics samples are grouped and used for contrasts in iAtlas. You can also upload a file to specify the cohort and sample groups. When you are done, cohort and sample group selection will be saved, and used throughout iAtlas. **You can refer back to this module at any time to review or modify your choices.** A summary of your cohort and sample groups is shown at the bottom of this page.
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+You can also access the iAtlas data by querying our database. Check our Jupyter Notebooks on how to [query the CRI-iAtlas database](https://github.com/CRI-iAtlas/iatlas-notebooks/blob/main/querying_TCGA_features_and_expression.ipynb). Information specific to the immune checkpoint inhibitor data is avaliable in the [Immune Checkpoint Inhibition data available in iAtlas](https://github.com/CRI-iAtlas/iatlas-notebooks/blob/main/ici_query_iatlas_data.ipynb) notebook.