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@CSB-IG

Computational Systems Biology/Integrative Genomics

Computational Systems Biology/Integrative Genomics at National Institute of Genomic Medicine - México

Popular repositories Loading

  1. tmr_search tmr_search Public

    Transcriptional Master Regulator search in Cancer, a pipeline using MARINa

    R 6 3

  2. sc-RNAseq-pipelines sc-RNAseq-pipelines Public

    Pipelines for single cell RNAseq data analysis

    Shell 3 1

  3. literature literature Public

    Data mining, mostly medline. Text mining. Network based analyses.

    Shell 2 10

  4. rnw rnw Public

    regulation network workflow

    R 2 2

  5. miRNAseq_rnw miRNAseq_rnw Public

    miRNAseq regulatory networks

    R 2 1

  6. pa3bc pa3bc Public

    Pathway Analyses of Apoptosis and Autophagy on Breast Cancer

    R 2 3

Repositories

Showing 10 of 61 repositories
  • FAERS Public Forked from TAKMU/FAERS

    Download files from FAERS, and prepare data to import to a Postgresql DB, and obtain PRR.

    CSB-IG/FAERS’s past year of commit activity
    Python 0 1 0 0 Updated Apr 10, 2025
  • EoN-Epidemics-on-Networks- Public

    Modeling epidemic phenomena in dynamic networks

    CSB-IG/EoN-Epidemics-on-Networks-’s past year of commit activity
    Python 1 0 0 0 Updated Apr 3, 2025
  • GSE167150_HiC_matrices Public

    Workflow to run HiC-Pro on TNBC and Contralateral normal samples

    CSB-IG/GSE167150_HiC_matrices’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 27, 2025
  • CSB-IG/CSB-IG.github.io’s past year of commit activity
    SCSS 1 GPL-3.0 1 0 0 Updated Mar 26, 2025
  • sc-RNAseq-pipelines Public

    Pipelines for single cell RNAseq data analysis

    CSB-IG/sc-RNAseq-pipelines’s past year of commit activity
    Shell 3 MIT 1 12 0 Updated Mar 18, 2025
  • GSE167150_HiC_networks Public

    Analysis of TNBC Hi-C Networks

    CSB-IG/GSE167150_HiC_networks’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Mar 14, 2025
  • FAERS-Antidepressants-ADR Public Forked from TAKMU/FAERS-Antidepressants-ADR

    Repository for code to find ADRs in antidepressants using FAERS. Made with the help of INMEGEN.

    CSB-IG/FAERS-Antidepressants-ADR’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Feb 27, 2025
  • Periodontitis_diseasome Public

    Code to perform the analysis in "The molecular comorbidity network of Periodontal Disease

    CSB-IG/Periodontitis_diseasome’s past year of commit activity
    R 0 0 0 0 Updated Oct 2, 2024
  • Arabidopsis_TMR Public

    Transcriptional Master Regulators of mild drought in growing Arabidopsis leaves

    CSB-IG/Arabidopsis_TMR’s past year of commit activity
    R 1 GPL-3.0 0 0 0 Updated May 22, 2024
  • ROSMAP_MultiOmics Public

    MultiOmics exploration of ROSMAP database through network analysis

    CSB-IG/ROSMAP_MultiOmics’s past year of commit activity
    R 0 MIT 0 0 0 Updated Mar 1, 2024

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