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Add working example for draft-3
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denis-yuen committed Aug 9, 2016
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2 changes: 1 addition & 1 deletion Dockstore.cwl
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Expand Up @@ -25,7 +25,7 @@ dct:creator:
requirements:
- class: DockerRequirement
dockerPull: "quay.io/briandoconnor/dockstore-tool-bamstats:1.25-6"
dockerPull: "quay.io/collaboratory/dockstore-tool-bamstats:1.25-6"
hints:
- class: ResourceRequirement
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18 changes: 18 additions & 0 deletions README.md
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[![Docker Repository on Quay.io](https://quay.io/repository/collaboratory/dockstore-tool-bamstats/status "Docker Repository on Quay.io")](https://quay.io/repository/collaboratory/dockstore-tool-bamstats)
[![Build Status](https://travis-ci.org/CancerCollaboratory/dockstore-tool-bamstats.svg)](https://travis-ci.org/CancerCollaboratory/dockstore-tool-bamstats)

# dockstore-tool-bamstats

A repo for the `Dockerfile` to create a Docker image for the BAMStats command. Also contains the
`Dockstore.yml` which is used by the [Dockstore](https://www.dockstore.org) to register
this container and describe how to call BAMStats for the community.

## Validation

This tool has been validated as a CWL draft-3 and v1.0 CommandLineTool.

Versions that we tested with are the following
```
avro (1.8.1)
cwl-runner (1.0)
cwl-upgrader (0.1.1)
cwltool (1.0.20160712154127)
schema-salad (1.14.20160708181155)
setuptools (25.1.6)
```


## Building Manually

Normally you would let [Quay.io](http://quay.io) build this. But, if you need to build
Expand Down Expand Up @@ -60,3 +76,5 @@ $> dockstore convert cwl2json --cwl Dockstore.cwl > Dockstore.json
$> dockstore launch --entry quay.io/collaboratory/dockstore-tool-bamstats:1.25-3 \
--json Dockstore.json
```


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