-
Notifications
You must be signed in to change notification settings - Fork 72
Dependencies and licenses
Mario Emmenlauer edited this page Jun 9, 2016
·
6 revisions
CellProfiler Analyst is distributed under the BSD 3-Clause License
Developed by the Broad Institute Copyright 2003-2016
The CellProfiler Analyst project is developed in Python and tested under Mac OSX 10.10.5, Windows Vista, and to a lesser extent some versions of Linux.
Code may be checked out from our GitHub repository here: https://github.com/CellProfiler/CellProfiler-Analyst
To run the developer version, you will need Python 2.7 and the following python packages:
- wx 3.0
- MySQL-python 1.2.5
- pysqlite2 (if using SQLite)
- numpy 1.10
- scipy 0.16
- seaborn 0.6 (for plotting functionality)
- pillow 2.7
- javabridge 1.0.11
- python-bioformats 1.0.5
- scikit-learn 0.17
It might be possible to run CellProfiler Analyst with other versions of Python or these packages.
CellProfiler Analyst can be run from a terminal as follows:
python CellProfiler-Analyst/Cellprofiler-Analyst.py