Skip to content

Commit

Permalink
Merge pull request #61 from Cellular-Semantics/fix-newline-issue-cura…
Browse files Browse the repository at this point in the history 
…ted-sheets

Fix out-of-place newlines in curated sheets
  • Loading branch information
@ubyndr
ubyndr authored Dec 5, 2024
2 parents a66e9b2 + 6213467 commit cb64379
Showing 1 changed file with 7 additions and 14 deletions.
21 changes: 7 additions & 14 deletions anndata2rdf/src/curated_data/HCA CxG clean V6 - Immune.csv
View file
Original file line number Diff line number Diff line change
Expand Up @@ -10,20 +10,13 @@ Dataset (indv datasets within larger group),Full name dataset (top of page),CxG
"COMBAT project: single cell gene expression data from COVID-19, sepsis and flu patient PBMCs",A blood atlas of COVID-19 defines hallmarks of disease severity and specificity,https://cellxgene.cziscience.com/e/ebc2e1ff-c8f9-466a-acf4-9d291afaf8b3.cxg/,https://datasets.cellxgene.cziscience.com/ac818189-5c6b-48d2-8bf1-f7511de7b5a9.h5ad,DOI: 10.1016/j.cell.2022.01.012,T,T,T,minor_subset_source ,Cell type and infection source,normal ,,Ahern et al. (2022) Cell ,https://cellxgene.cziscience.com/collections/8f126edf-5405-4731-8374-b5ce11f53e82,Disease,Adult
"COMBAT project: single cell gene expression data from COVID-19, sepsis and flu patient PBMCs",A blood atlas of COVID-19 defines hallmarks of disease severity and specificity,https://cellxgene.cziscience.com/e/ebc2e1ff-c8f9-466a-acf4-9d291afaf8b3.cxg/,https://datasets.cellxgene.cziscience.com/ac818189-5c6b-48d2-8bf1-f7511de7b5a9.h5ad,DOI: 10.1016/j.cell.2022.01.012,T,T,T,Source,Other ,normal ,,Ahern et al. (2022) Cell ,https://cellxgene.cziscience.com/collections/8f126edf-5405-4731-8374-b5ce11f53e82,Normal,Adult
"COMBAT project: single cell gene expression data from COVID-19, sepsis and flu patient PBMCs",A blood atlas of COVID-19 defines hallmarks of disease severity and specificity,https://cellxgene.cziscience.com/e/ebc2e1ff-c8f9-466a-acf4-9d291afaf8b3.cxg/,https://datasets.cellxgene.cziscience.com/ac818189-5c6b-48d2-8bf1-f7511de7b5a9.h5ad,DOI: 10.1016/j.cell.2022.01.012,T,T,T,scRNASeq_sample_ID,Other ,normal ,,Ahern et al. (2022) Cell ,https://cellxgene.cziscience.com/collections/8f126edf-5405-4731-8374-b5ce11f53e82,Normal,Adult
nygc multimodal pbmc,Integrated analysis of multimodal single-cell data,https://cellxgene.cziscience.com/e/ed5d841d-6346-47d4-ab2f-7119ad7e3a35.cxg/,https://datasets.cellxgene.cziscience.com/9bb8be38-d63f-4c8c-bf31-5ba078713315.h5ad,"DOI:10.1016/j.cell.2021.04.048
",T,T,T,celltype.l1,Cell types ,normal ,,Hao et al. (2021) Cell,https://cellxgene.cziscience.com/collections/b0cf0afa-ec40-4d65-b570-ed4ceacc6813/private,Normal,Adult
nygc multimodal pbmc,Integrated analysis of multimodal single-cell data,https://cellxgene.cziscience.com/e/ed5d841d-6346-47d4-ab2f-7119ad7e3a35.cxg/,https://datasets.cellxgene.cziscience.com/9bb8be38-d63f-4c8c-bf31-5ba078713315.h5ad,"DOI:10.1016/j.cell.2021.04.048
",T,T,T,celltype.l2,Cell types ,normal ,,Hao et al. (2021) Cell,https://cellxgene.cziscience.com/collections/b0cf0afa-ec40-4d65-b570-ed4ceacc6813/private,Normal,Adult
nygc multimodal pbmc,Integrated analysis of multimodal single-cell data,https://cellxgene.cziscience.com/e/ed5d841d-6346-47d4-ab2f-7119ad7e3a35.cxg/,https://datasets.cellxgene.cziscience.com/9bb8be38-d63f-4c8c-bf31-5ba078713315.h5ad,"DOI:10.1016/j.cell.2021.04.048
",T,T,T,celltype.l3,Cell types,normal ,,Hao et al. (2021) Cell,https://cellxgene.cziscience.com/collections/b0cf0afa-ec40-4d65-b570-ed4ceacc6813/private,Normal,Adult
nygc multimodal pbmc,Integrated analysis of multimodal single-cell data,https://cellxgene.cziscience.com/e/ed5d841d-6346-47d4-ab2f-7119ad7e3a35.cxg/,https://datasets.cellxgene.cziscience.com/9bb8be38-d63f-4c8c-bf31-5ba078713315.h5ad,"DOI:10.1016/j.cell.2021.04.048
",T,T,T,Phase ,Other ,normal ,,Hao et al. (2021) Cell,https://cellxgene.cziscience.com/collections/b0cf0afa-ec40-4d65-b570-ed4ceacc6813/private,Normal,Adult
nygc multimodal pbmc,Integrated analysis of multimodal single-cell data,https://cellxgene.cziscience.com/e/ed5d841d-6346-47d4-ab2f-7119ad7e3a35.cxg/,https://datasets.cellxgene.cziscience.com/9bb8be38-d63f-4c8c-bf31-5ba078713315.h5ad,"DOI:10.1016/j.cell.2021.04.048
",T,T,T,lane,Other ,normal ,,Hao et al. (2021) Cell,https://cellxgene.cziscience.com/collections/b0cf0afa-ec40-4d65-b570-ed4ceacc6813/private,Normal,Adult
nygc multimodal pbmc,Integrated analysis of multimodal single-cell data,https://cellxgene.cziscience.com/e/ed5d841d-6346-47d4-ab2f-7119ad7e3a35.cxg/,https://datasets.cellxgene.cziscience.com/9bb8be38-d63f-4c8c-bf31-5ba078713315.h5ad,"DOI:10.1016/j.cell.2021.04.048
",T,T,T,orig.ident,Other ,normal ,,Hao et al. (2021) Cell,https://cellxgene.cziscience.com/collections/b0cf0afa-ec40-4d65-b570-ed4ceacc6813/private,Normal,Adult
nygc multimodal pbmc,Integrated analysis of multimodal single-cell data,https://cellxgene.cziscience.com/e/ed5d841d-6346-47d4-ab2f-7119ad7e3a35.cxg/,https://datasets.cellxgene.cziscience.com/9bb8be38-d63f-4c8c-bf31-5ba078713315.h5ad,"DOI:10.1016/j.cell.2021.04.048
",T,T,T,time,Other ,normal ,,Hao et al. (2021) Cell,https://cellxgene.cziscience.com/collections/b0cf0afa-ec40-4d65-b570-ed4ceacc6813/private,Normal,Adult
nygc multimodal pbmc,Integrated analysis of multimodal single-cell data,https://cellxgene.cziscience.com/e/ed5d841d-6346-47d4-ab2f-7119ad7e3a35.cxg/,https://datasets.cellxgene.cziscience.com/9bb8be38-d63f-4c8c-bf31-5ba078713315.h5ad,"DOI:10.1016/j.cell.2021.04.048",T,T,T,celltype.l1,Cell types ,normal ,,Hao et al. (2021) Cell,https://cellxgene.cziscience.com/collections/b0cf0afa-ec40-4d65-b570-ed4ceacc6813/private,Normal,Adult
nygc multimodal pbmc,Integrated analysis of multimodal single-cell data,https://cellxgene.cziscience.com/e/ed5d841d-6346-47d4-ab2f-7119ad7e3a35.cxg/,https://datasets.cellxgene.cziscience.com/9bb8be38-d63f-4c8c-bf31-5ba078713315.h5ad,"DOI:10.1016/j.cell.2021.04.048",T,T,T,celltype.l2,Cell types ,normal ,,Hao et al. (2021) Cell,https://cellxgene.cziscience.com/collections/b0cf0afa-ec40-4d65-b570-ed4ceacc6813/private,Normal,Adult
nygc multimodal pbmc,Integrated analysis of multimodal single-cell data,https://cellxgene.cziscience.com/e/ed5d841d-6346-47d4-ab2f-7119ad7e3a35.cxg/,https://datasets.cellxgene.cziscience.com/9bb8be38-d63f-4c8c-bf31-5ba078713315.h5ad,"DOI:10.1016/j.cell.2021.04.048",T,T,T,celltype.l3,Cell types,normal ,,Hao et al. (2021) Cell,https://cellxgene.cziscience.com/collections/b0cf0afa-ec40-4d65-b570-ed4ceacc6813/private,Normal,Adult
nygc multimodal pbmc,Integrated analysis of multimodal single-cell data,https://cellxgene.cziscience.com/e/ed5d841d-6346-47d4-ab2f-7119ad7e3a35.cxg/,https://datasets.cellxgene.cziscience.com/9bb8be38-d63f-4c8c-bf31-5ba078713315.h5ad,"DOI:10.1016/j.cell.2021.04.048",T,T,T,Phase ,Other ,normal ,,Hao et al. (2021) Cell,https://cellxgene.cziscience.com/collections/b0cf0afa-ec40-4d65-b570-ed4ceacc6813/private,Normal,Adult
nygc multimodal pbmc,Integrated analysis of multimodal single-cell data,https://cellxgene.cziscience.com/e/ed5d841d-6346-47d4-ab2f-7119ad7e3a35.cxg/,https://datasets.cellxgene.cziscience.com/9bb8be38-d63f-4c8c-bf31-5ba078713315.h5ad,"DOI:10.1016/j.cell.2021.04.048",T,T,T,lane,Other ,normal ,,Hao et al. (2021) Cell,https://cellxgene.cziscience.com/collections/b0cf0afa-ec40-4d65-b570-ed4ceacc6813/private,Normal,Adult
nygc multimodal pbmc,Integrated analysis of multimodal single-cell data,https://cellxgene.cziscience.com/e/ed5d841d-6346-47d4-ab2f-7119ad7e3a35.cxg/,https://datasets.cellxgene.cziscience.com/9bb8be38-d63f-4c8c-bf31-5ba078713315.h5ad,"DOI:10.1016/j.cell.2021.04.048",T,T,T,orig.ident,Other ,normal ,,Hao et al. (2021) Cell,https://cellxgene.cziscience.com/collections/b0cf0afa-ec40-4d65-b570-ed4ceacc6813/private,Normal,Adult
nygc multimodal pbmc,Integrated analysis of multimodal single-cell data,https://cellxgene.cziscience.com/e/ed5d841d-6346-47d4-ab2f-7119ad7e3a35.cxg/,https://datasets.cellxgene.cziscience.com/9bb8be38-d63f-4c8c-bf31-5ba078713315.h5ad,"DOI:10.1016/j.cell.2021.04.048",T,T,T,time,Other ,normal ,,Hao et al. (2021) Cell,https://cellxgene.cziscience.com/collections/b0cf0afa-ec40-4d65-b570-ed4ceacc6813/private,Normal,Adult
Immunophenotyping of COVID-19 and influenza highlights the role of type I interferons in development of severe COVID-19,Immunophenotyping of COVID-19 and influenza highlights the role of type I interferons in development of severe COVID-19,https://cellxgene.cziscience.com/e/de2c780c-1747-40bd-9ccf-9588ec186cee.cxg/,https://datasets.cellxgene.cziscience.com/c588e5ee-0741-486e-9283-a8f0157a1406.h5ad,DOI: 10.1126/sciimmunol.abd1554,T,T,T,Celltype,Cell types,normal ,,Lee et al. (2020) Sci. Immunol.,https://cellxgene.cziscience.com/collections/4f889ffc-d4bc-4748-905b-8eb9db47a2ed,Disease,Adult
Immunophenotyping of COVID-19 and influenza highlights the role of type I interferons in development of severe COVID-19,Immunophenotyping of COVID-19 and influenza highlights the role of type I interferons in development of severe COVID-19,https://cellxgene.cziscience.com/e/de2c780c-1747-40bd-9ccf-9588ec186cee.cxg/,https://datasets.cellxgene.cziscience.com/c588e5ee-0741-486e-9283-a8f0157a1406.h5ad,DOI: 10.1126/sciimmunol.abd1555,T,T,T,Disease group,Other ,normal ,,Lee et al. (2020) Sci. Immunol.,https://cellxgene.cziscience.com/collections/4f889ffc-d4bc-4748-905b-8eb9db47a2ed,Disease,Adult
Immunophenotyping of COVID-19 and influenza highlights the role of type I interferons in development of severe COVID-19,Immunophenotyping of COVID-19 and influenza highlights the role of type I interferons in development of severe COVID-19,https://cellxgene.cziscience.com/e/de2c780c-1747-40bd-9ccf-9588ec186cee.cxg/,https://datasets.cellxgene.cziscience.com/c588e5ee-0741-486e-9283-a8f0157a1406.h5ad,DOI: 10.1126/sciimmunol.abd1556,T,T,T,Comorbidity,Other ,normal ,,Lee et al. (2020) Sci. Immunol.,https://cellxgene.cziscience.com/collections/4f889ffc-d4bc-4748-905b-8eb9db47a2ed,Disease,Adult
Expand Down

0 comments on commit cb64379

Please sign in to comment.