Update Manifests.toml

.dev/Manifest.toml

@@ -79,9 +79,9 @@ version = "0.21.4"
 
 [[deps.JuliaFormatter]]
 deps = ["CSTParser", "CommonMark", "DataStructures", "Glob", "Pkg", "PrecompileTools", "Tokenize"]
-git-tree-sha1 = "80031f6e58b09b0de4553bf63d9a36ec5db57967"
+git-tree-sha1 = "0bac3374ff3aa798148669ecb5559ba20c8b0e73"
 uuid = "98e50ef6-434e-11e9-1051-2b60c6c9e899"
-version = "1.0.39"
+version = "1.0.40"
 
 [[deps.LibCURL]]
 deps = ["LibCURL_jll", "MozillaCACerts_jll"]

docs/Manifest.toml

@@ -11,9 +11,9 @@ version = "0.2.4"
 
 [[deps.AMD]]
 deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"]
-git-tree-sha1 = "d4b99dd70d7136fe75ec74d072191d688448d39c"
+git-tree-sha1 = "45a1272e3f809d36431e57ab22703c6896b8908f"
 uuid = "14f7f29c-3bd6-536c-9a0b-7339e30b5a3e"
-version = "0.5.2"
+version = "0.5.3"
 
 [[deps.ANSIColoredPrinters]]
 git-tree-sha1 = "574baf8110975760d391c710b6341da1afa48d8c"
@@ -194,9 +194,9 @@ version = "0.1.2"
 
 [[deps.CLIMAParameters]]
 deps = ["DocStringExtensions", "TOML", "Test"]
-git-tree-sha1 = "e1820c154d02ba381e9a91ea7a5870b282d32abc"
+git-tree-sha1 = "d635b0e0ae4c0ba2213aac07a1c07e3b4fce5a00"
 uuid = "6eacf6c3-8458-43b9-ae03-caf5306d3d53"
-version = "0.7.22"
+version = "0.7.23"
 
 [[deps.CPUSummary]]
 deps = ["CpuId", "IfElse", "PrecompileTools", "Static"]
@@ -241,14 +241,18 @@ uuid = "aafaddc9-749c-510e-ac4f-586e18779b91"
 version = "0.2.2"
 
 [[deps.ChainRulesCore]]
-deps = ["Compat", "LinearAlgebra", "SparseArrays"]
-git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491"
+deps = ["Compat", "LinearAlgebra"]
+git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf"
 uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
-version = "1.17.0"
+version = "1.18.0"
+weakdeps = ["SparseArrays"]
+
+    [deps.ChainRulesCore.extensions]
+    ChainRulesCoreSparseArraysExt = "SparseArrays"
 
 [[deps.ClimaAtmos]]
 deps = ["ArgParse", "ArtifactWrappers", "Artifacts", "AtmosphericProfilesLibrary", "CLIMAParameters", "CUDA", "ClimaComms", "ClimaCore", "ClimaTimeSteppers", "CloudMicrophysics", "Colors", "Dates", "Dierckx", "DiffEqBase", "DiffEqCallbacks", "Distributions", "DocStringExtensions", "FastGaussQuadrature", "ImageFiltering", "Insolation", "Interpolations", "IntervalSets", "JLD2", "Krylov", "LambertW", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "OrdinaryDiffEq", "Pkg", "Printf", "RRTMGP", "Random", "RootSolvers", "SciMLBase", "StaticArrays", "Statistics", "StatsBase", "SurfaceFluxes", "TerminalLoggers", "Test", "Thermodynamics", "YAML"]
-path = ".."
+git-tree-sha1 = "88db61f3c30d4e16bfe38e7844f818ab738b0bb5"
 uuid = "b2c96348-7fb7-4fe0-8da9-78d88439e717"
 version = "0.16.2"
 
@@ -260,9 +264,9 @@ version = "0.5.5"
 
 [[deps.ClimaCore]]
 deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "Requires", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "UnPack"]
-git-tree-sha1 = "690b1737d6e8bfb67e8f9d4f54b37732d02f50b0"
+git-tree-sha1 = "8174265fe74081f378b11e36962c3b9cbb11c44f"
 uuid = "d414da3d-4745-48bb-8d80-42e94e092884"
-version = "0.10.53"
+version = "0.10.54"
 
 [[deps.ClimaTimeSteppers]]
 deps = ["CUDA", "ClimaComms", "Colors", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"]
@@ -469,12 +473,6 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272"
 uuid = "b552c78f-8df3-52c6-915a-8e097449b14b"
 version = "1.15.1"
 
-[[deps.DiskArrays]]
-deps = ["OffsetArrays"]
-git-tree-sha1 = "1bfa9de80f35ac63c6c381b2d43c590875896a1f"
-uuid = "3c3547ce-8d99-4f5e-a174-61eb10b00ae3"
-version = "0.3.22"
-
 [[deps.Distances]]
 deps = ["LinearAlgebra", "Statistics", "StatsAPI"]
 git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151"
@@ -591,9 +589,9 @@ version = "0.3.2"
 
 [[deps.FastGaussQuadrature]]
 deps = ["LinearAlgebra", "SpecialFunctions", "StaticArrays"]
-git-tree-sha1 = "93ff6a4d5e7bfe27732259bfabbdd19940d8af1f"
+git-tree-sha1 = "0f478d8bad6f52573fb7658a263af61f3d96e43a"
 uuid = "442a2c76-b920-505d-bb47-c5924d526838"
-version = "1.0.0"
+version = "0.5.1"
 
 [[deps.FastLapackInterface]]
 deps = ["LinearAlgebra"]
@@ -612,9 +610,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee"
 
 [[deps.FillArrays]]
 deps = ["LinearAlgebra", "Random"]
-git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434"
+git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef"
 uuid = "1a297f60-69ca-5386-bcde-b61e274b549b"
-version = "1.6.1"
+version = "1.7.0"
 weakdeps = ["SparseArrays", "Statistics"]
 
     [deps.FillArrays.extensions]
@@ -879,9 +877,9 @@ version = "0.9.4"
 
 [[deps.LDLFactorizations]]
 deps = ["AMD", "LinearAlgebra", "SparseArrays", "Test"]
-git-tree-sha1 = "cbf4b646f82bfc58bb48bcca9dcce2eb88da4cd1"
+git-tree-sha1 = "70f582b446a1c3ad82cf87e62b878668beef9d13"
 uuid = "40e66cde-538c-5869-a4ad-c39174c6795b"
-version = "0.10.0"
+version = "0.10.1"
 
 [[deps.LLVM]]
 deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"]
@@ -984,11 +982,12 @@ version = "2.5.2"
 
 [[deps.LinearSolve]]
 deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "EnzymeCore", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"]
-git-tree-sha1 = "9f27ba34f5821a0495efb09ea3a465c31326495a"
+git-tree-sha1 = "31353ba539d14a342908f765407abffd8db5f3c7"
 uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae"
-version = "2.10.0"
+version = "2.11.0"
 
     [deps.LinearSolve.extensions]
+    LinearSolveBandedMatricesExt = "BandedMatrices"
     LinearSolveBlockDiagonalsExt = "BlockDiagonals"
     LinearSolveCUDAExt = "CUDA"
     LinearSolveEnzymeExt = "Enzyme"
@@ -998,8 +997,10 @@ version = "2.10.0"
     LinearSolveKrylovKitExt = "KrylovKit"
     LinearSolveMetalExt = "Metal"
     LinearSolvePardisoExt = "Pardiso"
+    LinearSolveRecursiveArrayToolsExt = "RecursiveArrayTools"
 
     [deps.LinearSolve.weakdeps]
+    BandedMatrices = "aae01518-5342-5314-be14-df237901396f"
     BlockDiagonals = "0a1fb500-61f7-11e9-3c65-f5ef3456f9f0"
     CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba"
     Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9"
@@ -1009,6 +1010,7 @@ version = "2.10.0"
     KrylovKit = "0b1a1467-8014-51b9-945f-bf0ae24f4b77"
     Metal = "dde4c033-4e86-420c-a63e-0dd931031962"
     Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2"
+    RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd"
 
 [[deps.LogExpFunctions]]
 deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"]
@@ -1140,10 +1142,10 @@ uuid = "46d2c3a1-f734-5fdb-9937-b9b9aeba4221"
 version = "0.2.4"
 
 [[deps.NCDatasets]]
-deps = ["CFTime", "CommonDataModel", "DataStructures", "Dates", "DiskArrays", "NetCDF_jll", "NetworkOptions", "Printf"]
-git-tree-sha1 = "7fcb4378f9c648a186bcb996fa29acc929a179ed"
+deps = ["CFTime", "CommonDataModel", "DataStructures", "Dates", "NetCDF_jll", "NetworkOptions", "Printf"]
+git-tree-sha1 = "4263c4220f22e20729329838bf7e94a49d1ac32f"
 uuid = "85f8d34a-cbdd-5861-8df4-14fed0d494ab"
-version = "0.13.1"
+version = "0.12.17"
 
 [[deps.NLSolversBase]]
 deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"]
@@ -1187,9 +1189,17 @@ version = "1.2.0"
 
 [[deps.NonlinearSolve]]
 deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "EnumX", "FiniteDiff", "ForwardDiff", "LineSearches", "LinearAlgebra", "LinearSolve", "PrecompileTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "UnPack"]
-git-tree-sha1 = "a5f1f836da05d513c4143576af8f5d8e51b759f5"
+git-tree-sha1 = "ee92770e0832314ccd424d83a0ab4c75fc6dc91f"
 uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec"
-version = "2.2.1"
+version = "2.3.0"
+
+    [deps.NonlinearSolve.extensions]
+    NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt"
+    NonlinearSolveLeastSquaresOptimExt = "LeastSquaresOptim"
+
+    [deps.NonlinearSolve.weakdeps]
+    FastLevenbergMarquardt = "7a0df574-e128-4d35-8cbd-3d84502bf7ce"
+    LeastSquaresOptim = "0fc2ff8b-aaa3-5acd-a817-1944a5e08891"
 
 [[deps.OffsetArrays]]
 deps = ["Adapt"]
@@ -1238,9 +1248,9 @@ version = "6.58.0"
 
 [[deps.PDMats]]
 deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
-git-tree-sha1 = "d1b5f455bdd787aa7ac35d1f31f0bdb5d396ba27"
+git-tree-sha1 = "66b2fcd977db5329aa35cac121e5b94dd6472198"
 uuid = "90014a1f-27ba-587c-ab20-58faa44d9150"
-version = "0.11.27"
+version = "0.11.28"
 
 [[deps.PackageExtensionCompat]]
 git-tree-sha1 = "fb28e33b8a95c4cee25ce296c817d89cc2e53518"
@@ -1315,9 +1325,9 @@ version = "1.4.1"
 
 [[deps.PrettyTables]]
 deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"]
-git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a"
+git-tree-sha1 = "6842ce83a836fbbc0cfeca0b5a4de1a4dcbdb8d1"
 uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d"
-version = "2.2.7"
+version = "2.2.8"
 
 [[deps.Printf]]
 deps = ["Unicode"]
@@ -1385,9 +1395,9 @@ version = "1.3.4"
 
 [[deps.RecursiveArrayTools]]
 deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"]
-git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7"
+git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8"
 uuid = "731186ca-8d62-57ce-b412-fbd966d074cd"
-version = "2.39.0"
+version = "2.38.10"
 
     [deps.RecursiveArrayTools.extensions]
     RecursiveArrayToolsMeasurementsExt = "Measurements"
@@ -1465,9 +1475,9 @@ version = "0.6.39"
 
 [[deps.SciMLBase]]
 deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"]
-git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817"
+git-tree-sha1 = "9c4f861661e72d9257834d8e517d4511e91ca43b"
 uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
-version = "2.4.0"
+version = "2.4.2"
 
     [deps.SciMLBase.extensions]
     SciMLBasePyCallExt = "PyCall"
@@ -1514,9 +1524,9 @@ uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383"
 
 [[deps.SimpleNonlinearSolve]]
 deps = ["ArrayInterface", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "PackageExtensionCompat", "PrecompileTools", "Reexport", "SciMLBase", "StaticArraysCore"]
-git-tree-sha1 = "4d53b83af904049c493daaf2a225bcae994a3c59"
+git-tree-sha1 = "15ff97fa4881133caa324dacafe28b5ac47ad8a2"
 uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7"
-version = "0.1.20"
+version = "0.1.23"
 
     [deps.SimpleNonlinearSolve.extensions]
     SimpleNonlinearSolveNNlibExt = "NNlib"
@@ -1546,9 +1556,9 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc"
 
 [[deps.SortingAlgorithms]]
 deps = ["DataStructures"]
-git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee"
+git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63"
 uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c"
-version = "1.1.1"
+version = "1.2.0"
 
 [[deps.SparseArrays]]
 deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"]
@@ -1713,9 +1723,9 @@ version = "1.0.1"
 
 [[deps.Tables]]
 deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"]
-git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead"
+git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d"
 uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
-version = "1.11.0"
+version = "1.11.1"
 
 [[deps.Tar]]
 deps = ["ArgTools", "SHA"]
@@ -1780,9 +1790,9 @@ uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f"
 version = "0.5.23"
 
 [[deps.TranscodingStreams]]
-git-tree-sha1 = "7c9196c8c83802d7b8ca7a6551a0236edd3bf731"
+git-tree-sha1 = "49cbf7c74fafaed4c529d47d48c8f7da6a19eb75"
 uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
-version = "0.10.0"
+version = "0.10.1"
 weakdeps = ["Random", "Test"]
 
     [deps.TranscodingStreams.extensions]