Update dependencies

CliMA · Nov 21, 2023 · 79cb643 · 79cb643
1 parent 8550daf
commit 79cb643
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Showing 5 changed files with 97 additions and 97 deletions.
diff --git a/.dev/Manifest.toml b/.dev/Manifest.toml
@@ -1,6 +1,6 @@
 # This file is machine-generated - editing it directly is not advised
 
-julia_version = "1.9.4"
+julia_version = "1.9.3"
 manifest_format = "2.0"
 project_hash = "30b405be1c677184b7703a9bfb3d2100029ccad0"
 
@@ -86,12 +86,12 @@ version = "1.0.42"
 [[deps.LibCURL]]
 deps = ["LibCURL_jll", "MozillaCACerts_jll"]
 uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21"
-version = "0.6.4"
+version = "0.6.3"
 
 [[deps.LibCURL_jll]]
 deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"]
 uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0"
-version = "8.4.0+0"
+version = "7.84.0+0"
 
 [[deps.LibGit2]]
 deps = ["Base64", "NetworkOptions", "Printf", "SHA"]
@@ -100,7 +100,7 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433"
 [[deps.LibSSH2_jll]]
 deps = ["Artifacts", "Libdl", "MbedTLS_jll"]
 uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8"
-version = "1.11.0+1"
+version = "1.10.2+0"
 
 [[deps.Libdl]]
 uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"
@@ -213,7 +213,7 @@ version = "1.2.13+0"
 [[deps.nghttp2_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
-version = "1.52.0+1"
+version = "1.48.0+0"
 
 [[deps.p7zip_jll]]
 deps = ["Artifacts", "Libdl"]

diff --git a/benchmarks/bickleyjet/Manifest.toml b/benchmarks/bickleyjet/Manifest.toml
@@ -81,9 +81,9 @@ version = "0.4.2"
 
 [[deps.BandedMatrices]]
 deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"]
-git-tree-sha1 = "e63330a7d2dcc6245514d9035f4fab798ea6ca74"
+git-tree-sha1 = "67bcff3f50026b6fa952721525d3a04f0570d432"
 uuid = "aae01518-5342-5314-be14-df237901396f"
-version = "1.2.0"
+version = "1.2.1"
 weakdeps = ["SparseArrays"]
 
     [deps.BandedMatrices.extensions]
@@ -160,7 +160,7 @@ version = "0.5.6"
 deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "LinearAlgebra", "Memoize", "PkgVersion", "RecursiveArrayTools", "Requires", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "UnPack", "WeakValueDicts"]
 path = "../.."
 uuid = "d414da3d-4745-48bb-8d80-42e94e092884"
-version = "0.10.56"
+version = "0.11.0"
 
 [[deps.CodecZlib]]
 deps = ["TranscodingStreams", "Zlib_jll"]
@@ -1100,10 +1100,10 @@ uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3"
 version = "0.8.8"
 
 [[deps.StaticArrays]]
-deps = ["LinearAlgebra", "Random", "StaticArraysCore"]
-git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2"
+deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"]
+git-tree-sha1 = "5ef59aea6f18c25168842bded46b16662141ab87"
 uuid = "90137ffa-7385-5640-81b9-e52037218182"
-version = "1.6.5"
+version = "1.7.0"
 weakdeps = ["Statistics"]
 
     [deps.StaticArrays.extensions]

diff --git a/docs/Manifest.toml b/docs/Manifest.toml
@@ -26,9 +26,9 @@ weakdeps = ["ChainRulesCore", "Test"]
     AbstractFFTsTestExt = "Test"
 
 [[deps.AbstractLattices]]
-git-tree-sha1 = "f35684b7349da49fcc8a9e520e30e45dbb077166"
+git-tree-sha1 = "222ee9e50b98f51b5d78feb93dd928880df35f06"
 uuid = "398f06c4-4d28-53ec-89ca-5b2656b7603d"
-version = "0.2.1"
+version = "0.3.0"
 
 [[deps.AbstractTrees]]
 git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c"
@@ -147,9 +147,9 @@ version = "0.4.2"
 
 [[deps.BandedMatrices]]
 deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"]
-git-tree-sha1 = "e63330a7d2dcc6245514d9035f4fab798ea6ca74"
+git-tree-sha1 = "67bcff3f50026b6fa952721525d3a04f0570d432"
 uuid = "aae01518-5342-5314-be14-df237901396f"
-version = "1.2.0"
+version = "1.2.1"
 weakdeps = ["SparseArrays"]
 
     [deps.BandedMatrices.extensions]
@@ -232,9 +232,9 @@ version = "1.0.1+0"
 
 [[deps.CUDA]]
 deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "Crayons", "DataFrames", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LLVMLoopInfo", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "NVTX", "Preferences", "PrettyTables", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "Statistics", "UnsafeAtomicsLLVM"]
-git-tree-sha1 = "64461b0e9df3069248979113ce8ab6d11bd371cf"
+git-tree-sha1 = "76582ae19006b1186e87dadd781747f76cead72c"
 uuid = "052768ef-5323-5732-b1bb-66c8b64840ba"
-version = "5.1.0"
+version = "5.1.1"
 weakdeps = ["ChainRulesCore", "SpecialFunctions"]
 
     [deps.CUDA.extensions]
@@ -291,37 +291,37 @@ version = "0.5.6"
 deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "LinearAlgebra", "Memoize", "PkgVersion", "RecursiveArrayTools", "Requires", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "UnPack", "WeakValueDicts"]
 path = ".."
 uuid = "d414da3d-4745-48bb-8d80-42e94e092884"
-version = "0.10.56"
+version = "0.11.0"
 
 [[deps.ClimaCoreMakie]]
 deps = ["ClimaCore", "Makie"]
 path = "../lib/ClimaCoreMakie"
 uuid = "908f55d8-4145-4867-9c14-5dad1a479e4d"
-version = "0.4.0"
+version = "0.4.1"
 
 [[deps.ClimaCorePlots]]
 deps = ["ClimaCore", "RecipesBase", "StaticArrays", "TriplotBase"]
 path = "../lib/ClimaCorePlots"
 uuid = "cf7c7e5a-b407-4c48-9047-11a94a308626"
-version = "0.2.5"
+version = "0.2.6"
 
 [[deps.ClimaCoreSpectra]]
 deps = ["ClimaCore", "FFTW"]
 path = "../lib/ClimaCoreSpectra"
 uuid = "c2caaa1d-32ae-4754-ba0d-80e7561362e9"
-version = "0.1.0"
+version = "0.1.1"
 
 [[deps.ClimaCoreTempestRemap]]
 deps = ["ClimaComms", "ClimaCore", "Dates", "LinearAlgebra", "NCDatasets", "PkgVersion", "TempestRemap_jll"]
 path = "../lib/ClimaCoreTempestRemap"
 uuid = "d934ef94-cdd4-4710-83d6-720549644b70"
-version = "0.3.10"
+version = "0.3.11"
 
 [[deps.ClimaCoreVTK]]
 deps = ["ClimaCore", "WriteVTK"]
 path = "../lib/ClimaCoreVTK"
 uuid = "c8b6d40d-e815-466f-95ae-c48aefa668fa"
-version = "0.7.2"
+version = "0.7.3"
 
 [[deps.CloseOpenIntervals]]
 deps = ["Static", "StaticArrayInterface"]
@@ -495,9 +495,9 @@ version = "1.9.1"
 
 [[deps.DiffEqBase]]
 deps = ["ArrayInterface", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"]
-git-tree-sha1 = "5e365e0744ae1fdd44e62416343e7bfe848999d8"
+git-tree-sha1 = "35dadcc236b38661368d5a9d5e2dfabeee112c54"
 uuid = "2b5f629d-d688-5b77-993f-72d75c75574e"
-version = "6.139.0"
+version = "6.140.1"
 
     [deps.DiffEqBase.extensions]
     DiffEqBaseChainRulesCoreExt = "ChainRulesCore"
@@ -1356,9 +1356,9 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 
 [[deps.LinearAlgebraX]]
 deps = ["LinearAlgebra", "Mods", "Permutations", "Primes", "SimplePolynomials"]
-git-tree-sha1 = "558a338f1eeabe933f9c2d4052aa7c2c707c3d52"
+git-tree-sha1 = "4ef47ebed04355b50836d4844eabb9d357c1cc8f"
 uuid = "9b3f67b0-2d00-526e-9884-9e4938f8fb88"
-version = "0.1.12"
+version = "0.1.13"
 
 [[deps.LinearSolve]]
 deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "EnzymeCore", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "UnPack"]
@@ -1633,10 +1633,10 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
 version = "1.2.0"
 
 [[deps.NonlinearSolve]]
-deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "EnumX", "FastBroadcast", "FiniteDiff", "ForwardDiff", "LineSearches", "LinearAlgebra", "LinearSolve", "PrecompileTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "UnPack"]
-git-tree-sha1 = "f400009287afedef175058e64aadf7d41f593fef"
+deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "EnumX", "FastBroadcast", "FiniteDiff", "ForwardDiff", "LineSearches", "LinearAlgebra", "LinearSolve", "PrecompileTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "UnPack"]
+git-tree-sha1 = "25baacdcae7d8a981fd1d3d8f79c2cd2f8658332"
 uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec"
-version = "2.8.0"
+version = "2.8.1"
 
     [deps.NonlinearSolve.extensions]
     NonlinearSolveBandedMatricesExt = "BandedMatrices"
@@ -1736,9 +1736,9 @@ version = "1.6.2"
 
 [[deps.OrdinaryDiffEq]]
 deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLNLSolve", "SciMLOperators", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"]
-git-tree-sha1 = "ea532499662b771442746811fa345a7ea516225c"
+git-tree-sha1 = "42d0b4515472a25a3b47be228c03ec842bdc9d49"
 uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
-version = "6.59.1"
+version = "6.59.2"
 
 [[deps.PCRE2_jll]]
 deps = ["Artifacts", "Libdl"]
@@ -2120,9 +2120,9 @@ version = "0.6.42"
 
 [[deps.SciMLBase]]
 deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "QuasiMonteCarlo", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"]
-git-tree-sha1 = "baa0f858af55ea937183c988bd4b3e79e0bf699a"
+git-tree-sha1 = "b8518e0f02940d0d8275632921cc408c99fb5157"
 uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
-version = "2.8.1"
+version = "2.8.2"
 
     [deps.SciMLBase.extensions]
     SciMLBaseChainRulesCoreExt = "ChainRulesCore"
@@ -2208,9 +2208,9 @@ version = "1.1.0"
 
 [[deps.SimpleGraphs]]
 deps = ["AbstractLattices", "Combinatorics", "DataStructures", "IterTools", "LightXML", "LinearAlgebra", "LinearAlgebraX", "Optim", "Primes", "Random", "RingLists", "SimplePartitions", "SimplePolynomials", "SimpleRandom", "SparseArrays", "Statistics"]
-git-tree-sha1 = "b608903049d11cc557c45e03b3a53e9260579c19"
+git-tree-sha1 = "c5538efb4e308548fd2623e2778c0b6559b1aaa6"
 uuid = "55797a34-41de-5266-9ec1-32ac4eb504d3"
-version = "0.8.4"
+version = "0.8.5"
 
 [[deps.SimpleNonlinearSolve]]
 deps = ["ArrayInterface", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "PrecompileTools", "Reexport", "SciMLBase", "StaticArraysCore"]
@@ -2226,9 +2226,9 @@ version = "0.1.25"
 
 [[deps.SimplePartitions]]
 deps = ["AbstractLattices", "DataStructures", "Permutations"]
-git-tree-sha1 = "dcc02923a53f316ab97da8ef3136e80b4543dbf1"
+git-tree-sha1 = "e9330391d04241eafdc358713b48396619c83bcb"
 uuid = "ec83eff0-a5b5-5643-ae32-5cbf6eedec9d"
-version = "0.3.0"
+version = "0.3.1"
 
 [[deps.SimplePolynomials]]
 deps = ["Mods", "Multisets", "Polynomials", "Primes"]
@@ -2280,9 +2280,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
 
 [[deps.SparseDiffTools]]
 deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"]
-git-tree-sha1 = "49068dceed7febe32afe2d7b874172a7c3198cb3"
+git-tree-sha1 = "07272c80c278947baca092df0a01da4a10622ad5"
 uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804"
-version = "2.12.0"
+version = "2.13.0"
 
     [deps.SparseDiffTools.extensions]
     SparseDiffToolsEnzymeExt = "Enzyme"
@@ -2340,10 +2340,10 @@ weakdeps = ["OffsetArrays", "StaticArrays"]
     StaticArrayInterfaceStaticArraysExt = "StaticArrays"
 
 [[deps.StaticArrays]]
-deps = ["LinearAlgebra", "Random", "StaticArraysCore"]
-git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2"
+deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"]
+git-tree-sha1 = "5ef59aea6f18c25168842bded46b16662141ab87"
 uuid = "90137ffa-7385-5640-81b9-e52037218182"
-version = "1.6.5"
+version = "1.7.0"
 weakdeps = ["Statistics"]
 
     [deps.StaticArrays.extensions]
@@ -2624,9 +2624,9 @@ version = "0.1.0"
 
 [[deps.WoodburyMatrices]]
 deps = ["LinearAlgebra", "SparseArrays"]
-git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3"
+git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062"
 uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6"
-version = "0.5.5"
+version = "0.5.6"
 
 [[deps.WriteVTK]]
 deps = ["Base64", "CodecZlib", "FillArrays", "LightXML", "TranscodingStreams", "VTKBase"]