v0.93.3

Oceananigans v0.93.3

Diff since v0.93.2

Merged pull requests:

• Add test of enzyme flux bc (#3643) (@jlk9)
• Fix docs for VectorInvariant and WENOVectorInvariant (#3866) (@navidcy)
• Use on_architecture more liberally with boundary conditions (#3893) (@glwagner)
• Update examples to use new fluxes notation (#3907) (@glwagner)

Closed issues:

• "GPU enzyme tests are on the CPU (#3909)

🐧 v0.93.2

Oceananigans v0.93.2

Diff since v0.93.1

Merged pull requests:

• Topology-aware operators (#3268) (@simone-silvestri)
• Allow FieldTimeSeries to pass keyword arguments to jldopen (#3739) (@ali-ramadhan)
• (0.93.2) Update Adapt.jl compat and fix Float32 CATKE on GPU (#3876) (@ali-ramadhan)
• Include vector rotation in other test (#3881) (@simone-silvestri)

Closed issues:

• Support passing keyword arguments to jldopen when using FieldTimeSeries (#3680)
• CUDA illegal memory access when constructing a Float32 HydrostaticFreeSurfaceModel + CATKEVerticalDiffusivity on the GPU (#3870)

v0.93.1

Oceananigans v0.93.1

Diff since v0.93.0

Merged pull requests:

• Fix bug calling domain for LatitudeLongitudeGrid (#3871) (@glwagner)

v0.93.0

Oceananigans v0.93.0

Diff since v0.92.2

Merged pull requests:

• Correct vorticity computation at the corners of cubed sphere panels (#3325) (@siddharthabishnu)
• Fixes bug in FlatExtrapolation matching scheme (#3854) (@tomchor)
• (0.93.0) Use with_halos=true default for JLD2OutputWriter (#3860) (@glwagner)
• More specific ConformalCubedSpherePanel type (#3868) (@navidcy)
• Clean up redundant errors in FieldTimeSeries (#3869) (@glwagner)

Closed issues:

• Circulation and vorticity operators need to be updated at the cubed sphere corners (#1584)

v0.92.2

Oceananigans v0.92.2

Diff since v0.92.1

Merged pull requests:

• Temporary support for OrthogonalSphericalShellGrid for MakieExt (#3824) (@glwagner)
• Add papers using Oceananigans (#3861) (@navidcy)
• Correct accessing velocities from the background field (#3862) (@liuchihl)
• (0.92.2) Add more advection scheme tests; fix order adapting with tracer-specific schemes; fix WENOVectorInvariant (#3864) (@glwagner)

Closed issues:

• Cannot build HydrostaticFreeSurfaceModel with different advection schemes for different tracers (#3863)
• Bug in WENOVectorInvariant constructor (#3865)

🦛 v0.92.1

Oceananigans v0.92.1

Diff since v0.92.0

Merged pull requests:

• Bug in NetCDF output for curvilinear immersed grids (#3666) (@simone-silvestri)
• Different advection schemes in different directions (#3732) (@simone-silvestri)
• CompatHelper: bump compat for JLD2 to 0.5, (keep existing compat) (#3769) (@github-actions[bot])
• Enzyme (performance) mark some functions as non-differentiable (#3799) (@wsmoses)
• New Base.axes for AbstractField (#3801) (@glwagner)
• Enforce gauge condition in preconditioners for ConjugateGradientPoissonSolver (#3802) (@glwagner)
• Bring back support for closure tuples with CATKE (#3805) (@glwagner)
• Implement with_number_type utility for grids plus clean up (#3809) (@glwagner)
• Fix formatting and adds back interior velocity in tilted bottom boundary layer example (#3813) (@tomchor)
• Simplify kernel launching and add exclude_periphery option (#3814) (@glwagner)
• Add method to permit creating BackgroundFields out of Numbers directly (#3815) (@tomchor)
• Implement interface for set! and use it to set! distributed fields better (#3817) (@glwagner)
• Support AbstractOperations with MakieExtension (#3823) (@glwagner)
• Don't return special length for PartlyInMemory time series (#3825) (@glwagner)
• Add ConformalMapping Type to OrthogonalSphericalShellGrid for Specialized Dispatch (#3832) (@siddharthabishnu)
• Default momentum advection for the HydrostaticFreeSurfaceModel (#3842) (@simone-silvestri)
• Solves bug when calling ConjugateGradientPoissonSolver without specifying preconditioner (#3846) (@tomchor)
• Refactoring for ImmersedBoundaries to take precedence over Solvers (#3847) (@simone-silvestri)
• Resolve precompilation of _advective_fluxes (#3853) (@simone-silvestri)
• Use generalized coordinate nodes instead of xyz nodes for Lagrangian particle advection (#3855) (@ali-ramadhan)
• (0.92.1) Tag v0.92.1 (#3858) (@ali-ramadhan)

Closed issues:

• Error when using ImmersedBoundaryGrid with HydrostaticModel and drag boundary condition (#2711)
• Halo inflation + restriction on halo size makes it impossible to run some problems (#3622)
• Error when using OpenBoundaryCondition with HydrostaticFreeSurfaceModel (#3628)
• Why do we need 4 halo points in the vertical for VectorInvariant(vertical_scheme=Centered())? (#3699)
• Reductions with FieldTimeSeries on an ImmersedBoundaryGrid are very slow (#3750)
• Automatically retry jobs on Buildkite (#3773)
• Error using closure tuples with CATKEVerticalDiffusivity (#3804)
• Error with default HydrostaticFreeSurfaceModel on TripolarGrid (#3806)
• set! cannot distribute global arrays (#3816)
• Cannot construct a ConjugateGradientPoissonSolver with a default preconditioner (#3829)
• Immediate NaNs running a non-hydrostatic model with an immersed boundary and open boundary conditions and immersed pressure solver (#3831)
• Cannot precompile Oceananigans due to method overwriting (#3851)
• Illegal memory access on CPU and GPU with LagrangianParticles + HydrostaticFreeSurfaceModel + LatitudeLongitudeGrid (#3852)

🦨 v0.92.0

Oceananigans v0.92.0

Diff since v0.91.15

Merged pull requests:

• (0.92.0) Make RungeKutta3 the default time-stepper for NonhydrostaticModel (#3580) (@glwagner)
• Change default hydrostatic_pressure_anomaly to CenterField(grid) in NonhydrostaticModel (#3796) (@xkykai)

Closed issues:

• Spurious large-scale flow develops in a supposed quiescent flow when using a buoyancy model (#3795)

v0.91.15

Oceananigans v0.91.15

Diff since v0.91.14

Merged pull requests:

• Add ImmersedPressureSolver with FFTBasedPoissonSolver as preconditioner for complex domains (#3188) (@xkykai)
• Fix a bug in the adapt of PartialCellBottom (#3682) (@simone-silvestri)
• Enable direct FieldTimeSeries forcing (#3760) (@simone-silvestri)
• CompatHelper: bump compat for Enzyme in [weakdeps] to 0.13, (keep existing compat) (#3782) (@github-actions[bot])
• (0.91.15) Make GPUAdaptedFieldTimeSeries an AbstractField with Nothing grid (#3790) (@glwagner)
• Remove vestigial immersed_boundary from NonhydrostaticModel (#3797) (@glwagner)
• Make vertical line plots in y and z (#3798) (@glwagner)

Closed issues:

• PartialCellBottom needs to be adapted correctly for the GPU when using a HydrostaticFreeSurfaceModel (#3681)
• CUDA illegal memory access during HydrostaticFreeSurfaceModel construction with Float32 and CATKE (#3785)

v0.91.14

Oceananigans v0.91.14

Diff since v0.91.13

Merged pull requests:

• Remove Immersed map from Adapting the ImmersedBoundaryGrid (#3690) (@simone-silvestri)
• Supporting indexing a FieldDataset with a Symbol (#3754) (@ali-ramadhan)
• (0.91.14) Extend Lagrangian advection to immersed grids and add tests (#3765) (@tomchor)
• Add 3-location *nodes functions for ImmersedBoundaryGrid (#3776) (@ali-ramadhan)
• Remove Manifest.toml (#3783) (@glwagner)

Closed issues:

• LagrangianParticles not working with ImmersedGrids (#3761)
• λnodes and φnodes not defined for immersed lat-lon grids (#3771)
• Error when constructing a NetCDFOutputWriter with an immersed lat-lon grid (#3775)

v0.91.13

Oceananigans v0.91.13

Diff since v0.91.12

Merged pull requests:

• Fix typo in the README (#3757) (@glwagner)
• Bump compat entry for CubedSphere (#3763) (@navidcy)
• Fix FieldTimeSeries interpolation for single column grids with x, y locations (#3766) (@glwagner)
• (0.91.13) Use SeawaterPolynomials 0.3.5 (#3767) (@navidcy)