Fix #4624 - show ExHu STR sizes again (#4625)

CHANGELOG.md

@@ -6,7 +6,8 @@ About changelog [here](https://keepachangelog.com/en/1.0.0/)
 
 ## [Unreleased]
 ### Fixed
-- Warning icon in case pages for individuals where `confirmed_sex` is false 
+- Warning icon in case pages for individuals where `confirmed_sex` is false
+- Show allele sizes form ExpansionHunter on STR variantS page again
 
 ## [4.82.1]
 ### Fixed

scout/server/blueprints/variants/controllers.py

@@ -941,7 +941,6 @@ def parse_variant(
         variant_obj["end_chrom"] = variant_obj["chromosome"]
 
     # common motif count for STR variants
-
     variant_obj["str_mc"] = get_str_mc(variant_obj)
 
     # variant level links shown on variants page
@@ -970,7 +969,6 @@ def get_str_mc(variant_obj: dict) -> Optional[int]:
     from the variant FORMAT field, or as a number given in the ALT on the form
     '<STR123>'.
     """
-
     alt_mc = None
     if variant_obj["alternative"] == ".":
         return alt_mc
@@ -982,9 +980,9 @@ def get_str_mc(variant_obj: dict) -> Optional[int]:
     if alt_mc:
         return alt_mc
 
-    alt_num = NUM.match(variant_obj["alternative"])
+    alt_num = NUM.search(variant_obj["alternative"])
     if alt_num:
-        alt_mc = int(alt_num)
+        alt_mc = int(alt_num.group())
         return alt_mc
 
     return None

scout/server/blueprints/variants/templates/variants/str-variants.html

@@ -93,7 +93,7 @@
             <td class="str-link">{{ str_locus_info(variant) }}</td>
 	          <td class="text-end">{{ variant.str_display_ru or variant.str_ru or variant.reference }}</td>
             <td class="text-end"><b><span data-bs-toggle="tooltip" title="{{ variant.alternative }}">{{ variant.str_mc }}</span></b></td>
-        <td class="text-end"><span data-bs-toggle="tooltip" title="{{ variant.reference }}">{{ variant.str_ref or "." }}</span></td>
+            <td class="text-end"><span data-bs-toggle="tooltip" title="{{ variant.reference }}">{{ variant.str_ref or "." }}</span></td>
             <td>{{ str_status(variant) }}</td>
             <td>{% for sample in variant.samples %}
                   {% if sample.genotype_call != "./." %}