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[4.61]
Added
Filter case list by cases with variants in ClinVar submission
Filter case list by cases containing RNA-seq data - gene_fusion_reports and sample-level tracks (splice junctions and RNA coverage)
Additional case category Ignored, to be used for cases that don't fall in the existing 'inactive', 'archived', 'solved', 'prioritized' categories
Display number of cases shown / total number of cases available for each category on Cases page
Moved buttons to modify case status from sidebar to main case page
Link to Mutalyzer Normalizer tool on variant's transcripts overview to retrieve official HVGS descriptions
Option to manually load RNA MULTIQC report using the command scout load report -t multiqc_rna
Load RNA MULTIQC automatically for a case if config file contains the multiqc_rna key/value
Instructions in admin-guide on how to load case reports via the command line
Possibility to filter RD variants by a specific genotype call
Distinct colors for different inheritance models on RD Variant page
Gene panels PDF export with case variants hits by variant type
A couple of additional README badges for GitHub stats
Upload and display of pipeline reference info and executable version yaml files as custom reports
Testing CLI on hasta in PR template
Changed
Instructions on how to call dibs on scout-stage server in pull request template
Deprecated CLI commands scout load <delivery_report, gene_fusion_report, coverage_qc_report, cnv_report> to replace them with command scout load report -t <report type>
Refactored code to display and download custom case reports
Do not export Assertion method and Assertion method citation to ClinVar submission files according to changes to ClinVar's submission spreadsheet templates.
Simplified code to create and download ClinVar CSV files
Colorize inheritance models badges by category on VariantS page
Safe variants matching badge more visible on case page
Fixed
Non-admin users saving institute settings would clear loqusdb instance selection
Layout of variant position, cytoband and type in SV variant summary
Broken Build Status - GitHub badge on GitHub README page
Visibility of text on grey badges in gene panels PDF exports