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Fix load order, loqusdbapi connection and chanjo-report extension load warning

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@dnil dnil released this 24 Jun 12:23
· 134 commits to main since this release
e39355f

[4.84]

Changed

  • Clearer error message when a loqusdb query fails for an instance that initially connected
  • Do not load chanjo-report module if not needed and more visible message when it fails loading
  • Converted the HgncGene class into a Pydantic class
  • Swap menu open and collapse indicator chevrons - down is now displayed-open, right hidden-closed
  • Linters and actions now all use python 3.11

Fixed

  • Safer way to update variant genes and compounds that avoids saving temporary decorators into variants' database documents
  • Link to HGNC gene report on gene page
  • Case file load priority so that e.g. SNV get loaded before SV, or clinical before research, for consistent variant_id collisions