fixes for loading chain that crashed on write #26
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| name: CI | |
| # for the moment only runs on "action* branches". Coverage/pypi not yet set up. | |
| on: | |
| push: | |
| branches: | |
| - 'action*' | |
| tags: | |
| - '*' | |
| pull_request: | |
| branches: | |
| - '*' | |
| env: | |
| COBAYA_INSTALL_SKIP: polychord,planck_2015,CamSpec2021,2018_highl_CamSpec,unbinned,keck,classy | |
| COBAYA_PACKAGES_PATH: ../packages | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - name: "Anaconda: jammy LTS Python (fast; pip CAMB)" | |
| os: ubuntu-latest | |
| pydist: "ANACONDA" | |
| - name: "Latest Python 3.12" | |
| os: ubuntu-latest | |
| python-version: 3.12 | |
| mpi: openmpi | |
| - name: "OS X Python 3.8" | |
| os: macos-latest | |
| python-version: 3.8 | |
| mpi: openmpi | |
| - name: "Windows Python 3.12" | |
| os: windows-latest | |
| python-version: 3.12 | |
| mpi: intelmpi | |
| steps: | |
| - run: ln -s $(which gfortran-14) /usr/local/bin/gfortran | |
| if: matrix.os == 'macos-latest' | |
| - run: gfortran --version | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| if: matrix.pydist != 'ANACONDA' | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Set up Miniconda | |
| if: matrix.pydist == 'ANACONDA' | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-activate-base: false | |
| activate-environment: tests-environment | |
| environment-file: tests-environment.yml | |
| - name: Install mpi | |
| if: matrix.pydist != 'ANACONDA' | |
| uses: mpi4py/setup-mpi@v1 | |
| with: | |
| mpi: ${{ matrix.mpi }} | |
| # - name: Cache dependencies | |
| # uses: actions/cache@v2 | |
| # with: | |
| # path: | | |
| # ${{ github.workspace }}/packages/data/planck_supp_data_and_covmats | |
| # ${{ github.workspace }}/packages/data/bao_data | |
| # ${{ github.workspace }}/packages/data/sn_data | |
| # ${{ github.workspace }}/packages/data/des_data | |
| # ${{ github.workspace }}/packages/data/planck_2018_pliklite_native | |
| # key: ${{ runner.os }}-build-${{ matrix.python-version }}} | |
| - name: Install dependencies (pip) | |
| if: matrix.pydist != 'ANACONDA' | |
| run: | | |
| pip install mpi4py -i https://pypi.anaconda.org/mpi4py/simple | |
| pip install -r requirements.txt pytest-xdist pytest-cov flaky matplotlib dill coverage flake8 iminuit numba camb | |
| - name: Run flake8 | |
| shell: bash -el {0} | |
| run: | | |
| flake8 cobaya --select=E713,E704,E703,E714,E741,E10,E11,E20,E22,E23,E25,E27,E301,E302,E304,E9,F405,F406,F5,F6,F7,F8,W1,W2,W3,W6 --show-source --statistics | |
| - name: Run cobaya install and tests | |
| shell: bash -el {0} | |
| run: | | |
| coverage run --parallel-mode -m cobaya.install polychord --debug | |
| coverage run --parallel-mode -m pytest tests/ -n auto -k "not cosmo" --skip-not-installed --no-flaky-report | |
| coverage run --parallel-mode -m cobaya.install cosmo-tests --no-progress-bars --debug --skip-global | |
| pytest tests/ --cov -vv -s -k "cosmo" -n 2 --skip-not-installed --no-flaky-report | |
| - name: Run MPI tests | |
| shell: bash -el {0} | |
| run: | | |
| mpiexec -np 2 coverage run --parallel-mode -m pytest -x -m mpi tests/ --no-flaky-report | |
| - name: Run external likelihood tests | |
| shell: bash -el {0} | |
| run: | | |
| git clone --depth=1 https://github.com/CobayaSampler/example_external_likelihood | |
| pip install ./example_external_likelihood --quiet | |
| coverage run --parallel-mode -m unittest test_package.tests.test | |
| # - name: Upload coverage to Codecov | |
| # uses: codecov/codecov-action@v1 | |