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CogBrainHealthLab · Nov 9, 2024 · cc4dc4a · cc4dc4a
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -30,7 +30,7 @@ Imports:
     parallel,
     png,
     ggplotify,
+    plotly,
     psych,
     stringr,
     reshape2
-
diff --git a/FCtools.Rproj b/FCtools.Rproj
@@ -0,0 +1,17 @@
+Version: 1.0
+
+RestoreWorkspace: Default
+SaveWorkspace: Default
+AlwaysSaveHistory: Default
+
+EnableCodeIndexing: Yes
+UseSpacesForTab: Yes
+NumSpacesForTab: 2
+Encoding: UTF-8
+
+RnwWeave: Sweave
+LaTeX: pdfLaTeX
+
+BuildType: Package
+PackageUseDevtools: Yes
+PackageInstallArgs: --no-multiarch --with-keep.source
diff --git a/NAMESPACE b/NAMESPACE
@@ -16,6 +16,7 @@ export(reorder_subcortical)
 export(vectorizeFC)
 export(vizChord)
 export(vizConnectogram)
+export(vizGlassbrain)
 export(vizHeatmap)
 importFrom(caret,createFolds)
 importFrom(ciftiTools,ciftiTools.setOption)
@@ -73,6 +74,9 @@ importFrom(igraph,get.edgelist)
 importFrom(igraph,graph_from_adjacency_matrix)
 importFrom(parallel,makeCluster)
 importFrom(parallel,stopCluster)
+importFrom(plotly,add_trace)
+importFrom(plotly,layout)
+importFrom(plotly,plot_ly)
 importFrom(png,readPNG)
 importFrom(psych,fisherz)
 importFrom(reshape2,melt)

diff --git a/README.md b/README.md
@@ -15,20 +15,31 @@ different atlas parcellation schemes, as a result, the lengths of the
 input vectors (N x N FC/SC matrix stringed out into a single vector) are
 contingent upon the atlas parcellation schemes used.
 
-### **2. Connectogram**
 
-**a. Install packages**
+### **1. Glassbrain (New!)**
+**A. Install packages**
 
 If you have not previously installed this package:
 
 ``` r
 install.packages("devtool")
 devtools::install_github("CogBrainHealthLab/FCtools")
 ```
+**B. Plotting the glassbrain**
 
 ``` r
 library(FCtools)
+
+mask=sample(c(1,0), 7021, replace = TRUE, prob = c(0.001, 0.999))
+data=runif(7021,min = -1,max=1)*mask
+
+vizGlassbrain(data,orientation_labels = T)
 ```
+![](man/figures/plotly.png) 
+
+
+### **2. Connectogram**
+
 
 **A. Plotting the connectogram**
 
@@ -221,7 +232,7 @@ vizChord(data=rbind(network1,network2,network3,network4),
 ```
 ![](man/figures/4xFCchord_119.png) 
 
-### **3. Heatmap**
+### **4. Heatmap**
 
 The connectogram and chord diagram cannot be use to visualize edge-level statistics for all edges in the connectome. Instead a heatmap should be used
 
@@ -240,3 +251,4 @@ sub4=get("demomat")[4,]
 vizHeatmap(data=rbind(sub1,sub2,sub3,sub4),title=c("sub1","sub2","sub3","sub4"), filename = "4xheatmap219.png", ncol=2, nrow=2)
 ```
 ![](man/figures/4xheatmap219.png) 
+
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -2,5 +2,5 @@ pandoc: 3.1.11
 pkgdown: 2.0.9
 pkgdown_sha: ~
 articles: {}
-last_built: 2024-09-06T18:24Z
+last_built: 2024-11-09T07:32Z
 
diff --git a/docs/reference/FC_chord119.png b/docs/reference/FC_chord119.png
diff --git a/docs/reference/extract_headmotion.html b/docs/reference/extract_headmotion.html
diff --git a/docs/reference/figures/plotly.png b/docs/reference/figures/plotly.png
diff --git a/docs/reference/index.html b/docs/reference/index.html
diff --git a/docs/reference/intersubject_similarity-1.png b/docs/reference/intersubject_similarity-1.png
diff --git a/docs/reference/labels_dat.html b/docs/reference/labels_dat.html
diff --git a/docs/reference/libs/crosstalk-1.2.1/css/crosstalk.min.css b/docs/reference/libs/crosstalk-1.2.1/css/crosstalk.min.css