MAINT: update lock files (#151)

* DX: lower minimal test coverage to 54% * DX: remove `setuptools-scm` version configuration * DX: run tests with `uv-venv-lock-runner` * FIX: set correct ignore patterns for `sphinx-autobuild` * MAINT: remove dynamic version from `uv.lock` * MAINT: remove `pygments` version constraint * MAINT: update developer configuration
ComPWA · Jan 29, 2025 · b658ea0 · b658ea0
1 parent 7c2db34
commit b658ea0
Show file tree

Hide file tree

Showing 7 changed files with 608 additions and 475 deletions.
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -37,7 +37,7 @@ jobs:
     uses: ComPWA/actions/.github/workflows/[email protected]
     with:
       coverage-target: ampform_dpd
-      macos-python-version: "3.9"
+      macos-python-version: "3.10"
       specific-pip-packages: ${{ inputs.specific-pip-packages }}
     secrets:
       CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -13,7 +13,7 @@ repos:
       - id: check-useless-excludes
 
   - repo: https://github.com/ComPWA/policy
-    rev: 0.5.15
+    rev: 0.6.1
     hooks:
       - id: check-dev-files
         args:
@@ -23,6 +23,7 @@ repos:
           - --repo-title=AmpForm-DPD
       - id: colab-toc-visible
       - id: remove-empty-tags
+      - id: set-nb-display-name
 
   - repo: https://github.com/kynan/nbstripout
     rev: 0.8.1
@@ -53,7 +54,7 @@ repos:
             metadata.vscode
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.9.1
+    rev: v0.9.3
     hooks:
       - id: ruff
         args: [--fix]
@@ -94,12 +95,12 @@ repos:
           - --in-place
 
   - repo: https://github.com/streetsidesoftware/cspell-cli
-    rev: v8.17.0
+    rev: v8.17.1
     hooks:
       - id: cspell
 
   - repo: https://github.com/editorconfig-checker/editorconfig-checker.python
-    rev: 3.0.3
+    rev: 3.2.0
     hooks:
       - id: editorconfig-checker
         name: editorconfig
@@ -120,11 +121,11 @@ repos:
           - python
 
   - repo: https://github.com/ComPWA/pyright-pre-commit
-    rev: v1.1.391
+    rev: v1.1.392
     hooks:
       - id: pyright
 
   - repo: https://github.com/astral-sh/uv-pre-commit
-    rev: 0.5.18
+    rev: 0.5.25
     hooks:
       - id: uv-lock
diff --git a/.readthedocs.yml b/.readthedocs.yml
@@ -14,7 +14,7 @@ build:
       uv run \
         --group doc \
         --no-dev \
-        --with tox \
+        --with tox-uv \
         tox -e doc
       mkdir -p $READTHEDOCS_OUTPUT
       mv docs/_build/html $READTHEDOCS_OUTPUT

diff --git a/.vscode/settings.json b/.vscode/settings.json
@@ -47,6 +47,7 @@
   "notebook.gotoSymbols.showAllSymbols": true,
   "python.analysis.autoImportCompletions": false,
   "python.analysis.inlayHints.pytestParameters": true,
+  "python.defaultInterpreterPath": ".venv/bin/python",
   "python.terminal.activateEnvironment": false,
   "python.testing.pytestArgs": ["--color=no", "--verbose", "--verbose"],
   "python.testing.pytestEnabled": true,

diff --git a/codecov.yml b/codecov.yml
@@ -9,7 +9,7 @@ coverage:
   status:
     project:
       default:
-        target: 58%
+        target: 54%
         threshold: 1%
         base: auto
         if_no_uploads: error

diff --git a/pyproject.toml b/pyproject.toml
@@ -18,6 +18,7 @@ classifiers = [
     "Programming Language :: Python :: 3.10",
     "Programming Language :: Python :: 3.11",
     "Programming Language :: Python :: 3.12",
+    "Programming Language :: Python :: 3.13",
     "Programming Language :: Python :: 3.9",
     "Programming Language :: Python",
     "Topic :: Scientific/Engineering :: Physics",
@@ -121,10 +122,17 @@ namespaces = false
 where = ["src"]
 
 [tool.setuptools_scm]
-local_scheme = "no-local-version"
-version_scheme = "only-version"
 write_to = "src/ampform_dpd/version.py"
 
+[tool.coverage.report]
+exclude_also = [
+    "if TYPE_CHECKING:",
+]
+
+[tool.coverage.run]
+branch = true
+source = ["src"]
+
 [tool.mypy]
 exclude = "_build"
 show_error_codes = true
@@ -145,7 +153,6 @@ disallow_untyped_defs = false
 module = ["tests.*"]
 
 [tool.pyright]
-exclude = ["**/.venv/"]
 reportArgumentType = false
 reportAssignmentType = false
 reportAttributeAccessIssue = false
@@ -358,6 +365,11 @@ trailing_comma_inline_array = true
 
 [tool.tox]
 env_list = [
+    "3.9",
+    "3.10",
+    "3.11",
+    "3.12",
+    "3.13",
     "cov",
     "docnb-force",
     "linkcheck",
@@ -369,18 +381,21 @@ skip_install = true
 skip_missing_interpreters = true
 
 [tool.tox.env_run_base]
-allowlist_externals = ["pytest"]
 commands = [["pytest", {replace = "posargs", extend = true}]]
-description = "Run all unit tests"
+dependency_groups = ["test"]
+description = "Run test suite on Python {env_name}"
+no_package = false
 pass_env = ["*"]
+runner = "uv-venv-lock-runner"
+skip_install = false
+skip_missing_interpreters = false
 
 [tool.tox.env.cov]
-allowlist_externals = ["pytest"]
 commands = [
     [
         "pytest",
         {replace = "posargs", extend = true},
-        "--cov-fail-under=58",
+        "--cov-fail-under=54",
         "--cov-report=html",
         "--cov-report=xml",
         "--cov=ampform_dpd",
@@ -390,76 +405,76 @@ description = "Compute test coverage"
 
 [tool.tox.env.doc]
 allowlist_externals = ["sphinx-build"]
+base = []
 commands = [
     [
         "sphinx-build",
         "--builder=html",
         "--fail-on-warning",
         "--keep-going",
         "docs/",
-        "docs/_build/html",
+        "docs/_build/html/",
     ],
 ]
 description = "Build documentation with Sphinx"
 
 [tool.tox.env.doclive]
 allowlist_externals = ["sphinx-autobuild"]
+base = []
 commands = [
     [
         "sphinx-autobuild",
-        "--ignore=docs/_build/",
-        "--ignore=docs/_images/",
-        "--ignore=docs/api/",
-        "--ignore=docs/export/",
-        "--open-browser",
         "--port=0",
-        "--re-ignore='.*/__pycache__/.*'",
-        "--re-ignore='.*/.ipynb_checkpoints/.*'",
-        "--re-ignore='.*/.virtual_documents/.*'",
-        "--re-ignore='.*\\.pdf'",
-        "--re-ignore='.*\\.pkl'",
-        "--re-ignore='.*\\.png'",
-        "--re-ignore='.*\\.svg'",
-        "--re-ignore='.*\\.tmp'",
-        "--watch=docs",
+        "--re-ignore=/__pycache__(/.*)?$",
+        "--re-ignore=/_build(/.*)?$",
+        "--re-ignore=/\\.cache(/.*)?$",
+        "--re-ignore=/\\.egg-info(/.*)?$",
+        "--re-ignore=/\\.ipynb_checkpoints(/.*)?$",
+        "--re-ignore=/\\.virtual_documents(/.*)?$",
+        "--re-ignore=/api(/.*)?$",
+        "--re-ignore=/docs$",
+        "--re-ignore=/version\\.py$",
+        "--re-ignore=\\.egg-info(/.*)?$",
+        "--re-ignore=\\.pkl$",
+        "--re-ignore=\\.png$",
+        "--re-ignore=\\.svg$",
         "--watch=src",
         "docs/",
-        "docs/_build/html",
+        "docs/_build/html/",
     ],
 ]
 description = "Set up a server to directly preview changes to the HTML pages"
 
 [tool.tox.env.docnb]
-base = ["tool.tox.env.doc", "tool.tox.env_run_base"]
+base = ["tool.tox.env.doc"]
 description = "{[tool.tox.env.doc]description} with cached notebook execution"
 set_env.EXECUTE_NB = "yes"
 
 [tool.tox.env.docnb-force]
-base = ["tool.tox.env.doc", "tool.tox.env_run_base"]
+base = ["tool.tox.env.doc"]
 description = "{[tool.tox.env.doc]description} with notebook execution (no cache)"
 set_env.FORCE_EXECUTE_NB = "yes"
 
 [tool.tox.env.docnblive]
-base = ["tool.tox.env.doclive", "tool.tox.env_run_base"]
+base = ["tool.tox.env.doclive"]
 description = "{[tool.tox.env.doclive]description} with cached notebook execution"
 set_env.EXECUTE_NB = "yes"
 
 [tool.tox.env.linkcheck]
-allowlist_externals = ["sphinx-build"]
+base = ["tool.tox.env.doc"]
 commands = [
     [
         "sphinx-build",
         "--builder=linkcheck",
         "--show-traceback",
         "docs/",
-        "docs/_build/linkcheck",
+        "docs/_build/linkcheck/",
     ],
 ]
 description = "Check external links in the documentation (requires internet connection)"
 set_env.PYTHONWARNINGS = ""
 
 [tool.tox.env.nb]
-allowlist_externals = ["pytest"]
 commands = [
     [
         "pytest",
@@ -469,15 +484,28 @@ commands = [
     ],
 ]
 description = "Run all notebooks with pytest"
+with_dev = true
 
 [tool.tox.env.sty]
 allowlist_externals = ["pre-commit"]
+base = []
 commands = [["pre-commit", "run", "--all-files", {replace = "posargs", extend = true}]]
 description = "Perform all linting, formatting, and spelling checks"
 
+[tool.tox.labels]
+doc = [
+    "docnb-force",
+    "linkcheck",
+]
+test = [
+    "3.9",
+    "3.10",
+    "3.11",
+    "3.12",
+    "3.13",
+]
+
 [tool.uv]
 constraint-dependencies = [
     "numpy~=1.0",
-    "pygments!=2.19.*", # https://github.com/felix-hilden/sphinx-codeautolink/issues/152
-    "sphinx-codeautolink!=0.16.0",
 ]