Fixed small bug in LOLA function

CompEpigen · Jan 9, 2020 · 8a0b0ef · 8a0b0ef
1 parent 75a3ec9
commit 8a0b0ef
Showing 1 changed file with 5 additions and 0 deletions.
diff --git a/R/LMC_interpretation.R b/R/LMC_interpretation.R
@@ -56,6 +56,11 @@ lmc.lola.enrichment <- function(medecom.result,
                                 assembly="hg19",
                                 lola.db=NULL){
   #require("RnBeads")
+  if(!requireNamespace("LOLA")){
+    if(!requireNamespace("BiocManager")) install.packages("BiocManager",repos="https://cloud.r-project.org/")
+    BiocManager::install("LOLA",dependencies=T)
+    if(!requireNamespace("simpleCache")) install.packages("simpleCache",repos="https://cloud.r-project.org/")
+  }
   require("LOLA")
   require("qvalue")
   rnb.mode <- F