BEAUti
Support for tip date sampling by setting 'tipsonly' in MRCA Priors
Allow packages to specify priors, e.g. multi-monophyletic constraints in BEASTLabs, geographical priors in GEO_SPHERE
Allow packages to specify file importers, which allows microsattelite support through the BEASTvntr package
Gamma distribution allows multiple parameterisations
Packages used now encoded in XML, for better error reporting of missing packages
Better looking on high-res screens
Package Manager
Links to documentation available
Better layout
BEAST
allow multiple citations per class
allow trait sets with unspecified dates
allow multiple arguments to Sum
improved error reporting
TreeAnnotator fix for phylogepgraphy in low-mem mode.
LogCombiner suppress duplicate '=' in tree output