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CAT T2T CHM13 GFF3 have gene_name mismatches between gene and transcript records #306

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diekhans opened this issue Dec 11, 2023 · 0 comments

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@diekhans
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I've attached an example of EPHA2, which has the name MSTRG.59 in the gene records.
Also attached are a report on all of the gene name mismatches

gff3 is at https://s3-us-west-2.amazonaws.com/human-pangenomics/T2T/CHM13/assemblies/annotation/chm13.draft_v2.0.gene_annotation.gff3

I suggest adding a sanity check before writing the file that all of the records for a given gene have the same gene_name
MSTRG.59-EPHA2.gff3.gz
gene_annotation_probs.tsv.gz

@diekhans diekhans changed the title CAT T2T CHM13 GFF3 have gene_name mismatches better gene and transcript records CAT T2T CHM13 GFF3 have gene_name mismatches between gene and transcript records Dec 15, 2023
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