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CAT should handle internal exon expansions #320

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diekhans opened this issue Aug 1, 2024 · 0 comments
Open

CAT should handle internal exon expansions #320

diekhans opened this issue Aug 1, 2024 · 0 comments

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@diekhans
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diekhans commented Aug 1, 2024

T2T-CHM13 has shown that some genes have internal expansion in the number of coding exons. LPA is an example.

This is not currently handled by any of the annotation tools.

CATs use of Augustus could be leverage to detect such expansions.

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