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rdkit_summary

rdkit总结与记录

分子读取、输出与可视化

read_write_visualize.ipynb

3D构象生成

3D_conformers_generation.ipynb

高亮展示分子中匹配的子结构

substructure_search_and_highlight.ipynb

搜索侧链符合某种条件的子结构

substructure_that_meet_criteria.ipynb

SMARTS规则速查表

SMARTS_cheatsheet.md

子结构删除、替换、切割操作

substructure_delete_replace_split.ipynb

摩根分子指纹计算、提取、可视化

Morgan_Fingerprints_generate_visualize.ipynb

最大公共子结构,MCS搜索与参数介绍

MCS.ipynb

各类分子指纹、相似性度量、多样化分子库构建

FP_similarity_and_application.ipynb

分子描述符计算与可视化

descriptor_calculate_visualize.ipynb

化学特征、药效团提取与2D药效团指纹计算

features_pharmacophores_2D_FP.ipynb

分子片段、片段指纹、指纹重要性分析

fragments_FP_and_analysis.ipynb

骨架分解、侧链分离

scaffold_and_side_chain_decomposition.ipynb

化学反应操作与处理

chemical_reaction.ipynb

在化学反应中对原子进行保护

protect_atoms_in_reaction.ipynb

通过Recap和BRICS进行分子拆解与合成

recap_brics_decompose_build.ipynb

原子、键、环操作与药效团查找

atom_bond_ring_and_pharmacophore_search.ipynb

分子修改与编辑

modifying_molecules.ipynb

python操作postgresql数据库与自动导入分子

postgresql_by_psycopg2.ipynb

在PostgreSQL中进行分子结构搜索与查询

postgresql_substructure_search.ipynb

在PostgreSQL中进行分子相似性搜索

postgresql_similarity_search.ipynb

使用rdMolDraw2D模块设置并绘制分子

rdMolDraw2D_for_png_svg.ipynb

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