Merge pull request #78 from CrayLabs/develop

v0.3.2

.github/workflows/build_wheels.yml → .github/workflows/release.yml

@@ -1,6 +1,9 @@
-name: build-wheels
+name: deploy-release
+
+on:
+  release:
+    types: [published]
 
-on: [release]
 
 env:
   HOMEBREW_NO_ANALYTICS: "ON" # Make Homebrew installation a little quicker
@@ -88,7 +91,7 @@ jobs:
           name: artifact
           path: dist
 
-      - uses: pypa/gh-action-pypi-publish@master
+      - uses: pypa/gh-action-pypi-publish@release/v1
         with:
           user: __token__
           password: ${{ secrets.PYPI }}

.github/workflows/run_local_tests.yml

@@ -42,15 +42,28 @@ jobs:
         if: contains(matrix.os, 'macos')
         run: brew install make || true
 
+
+      - name: Install SmartSim (with ML backends if not python 3.9)
+        if: matrix.python-version != '3.9'
+        run: |
+          echo "$(brew --prefix)/opt/make/libexec/gnubin" >> $GITHUB_PATH
+          python -m pip install -vvv .[dev,ml]
+
       - name: Install SmartSim
+        if: matrix.python-version == '3.9'
         run: |
           echo "$(brew --prefix)/opt/make/libexec/gnubin" >> $GITHUB_PATH
           python -m pip install -vvv .[dev]
 
-      - name: Install ML Runtimes with Smart
+      - name: Install ML Runtimes with Smart (with pt and tf)
+        if: contains(matrix.os, 'macos')
         run: smart -v --device cpu
 
+      - name: Install ML Runtimes with Smart (with pt tf and onnx support)
+        if: contains(matrix.os, 'ubuntu')
+        run: smart -v --device cpu --onnx
+
       - name: Run Pytest
         run: |
           echo "SMARTSIM_LOG_LEVEL=debug" >> $GITHUB_ENV
-          py.test --import-mode=importlib -o log_cli=true
+          py.test -s --import-mode=importlib -o log_cli=true

.gitignore

@@ -2,6 +2,8 @@
 __pycache__
 .ipynb_checkpoints
 .pytest_cache/
+.coverage*
+htmlcov
 
 # Dependencies
 third-party

CITATION.cff

@@ -0,0 +1,29 @@
+cff-version: 1.1.0
+authors:
+  - family-names: Partee
+    given-names: Sam
+    orcid: https://orcid.org/0000-0001-6005-5116
+    email: [email protected]
+  - family-names: Ellis
+    given-names: Matthew
+    orcid: https://orcid.org/0000-0002-5782-5447
+  - family-names: Rigazzi
+    given-names: Alessandro
+    orcid: https://orcid.org/0000-0003-2132-7726
+  - family-names: Bachman
+    given-names: Scott
+    orcid: https://orcid.org/0000-0002-6479-4300
+  - family-names: Marques
+    given-names: Gustavo
+    orcid: https://orcid.org/0000-0001-7238-0290
+  - family-names: Shao
+    given-names: Andrew
+    orcid: https://orcid.org/0000-0003-3658-512X
+  - family-names: Benjamin
+    given-names: Robbins
+    orcid: https://orcid.org/0000-0003-3658-512X
+
+title: "Using Machine Learning at Scale in HPC Simulations with SmartSim: An Application to Ocean Climate Modeling"
+doi: 10.5281/zenodo.4682270
+date-released: 2021-4-12
+license: "BSD-2-Clause"

Makefile

@@ -90,6 +90,11 @@ check-lint:
 docs:
 	@cd doc; make html
 
+# help: cov                            - generate html coverage report for Python client
+.PHONY: cov
+cov:
+		@cd ./tests/ && coverage html
+		@echo if data was present, coverage report is in ./tests/htmlcov/index.html
 
 # help:
 # help: Test
@@ -98,15 +103,23 @@ docs:
 # help: test                           - Build and run all tests
 .PHONY: test
 test:
-	@cd ./tests/; python -m pytest
+	@cd ./tests/; python -m pytest --ignore=full_wlm/
 
 # help: test-verbose                   - Build and run all tests [verbosely]
 .PHONY: test-verbose
 test-verbose:
-	@cd ./tests/; python -m pytest -vv
+	@cd ./tests/; python -m pytest -vv --ignore=full_wlm/
 
 # help: test-cov                       - run python tests with coverage
 .PHONY: test-cov
 test-cov:
+	@cd ./tests/; python -m pytest --cov=../smartsim -vv --cov-config=${COV_FILE} --ignore=full_wlm/
+
+
+# help: test-full                      - run all WLM tests with Python coverage (full test suite)
+# help:                                  WARNING: do not run test-full on shared systems.
+.PHONY: test-full
+test-full:
 	@cd ./tests/; python -m pytest --cov=../smartsim -vv --cov-config=${COV_FILE}
 
+