add earthdata tutorials to toc and remove warning (#83)

* add earthaccess tutorials to toc and remove spaces in filenames * filter warnings and remove stderr output from rendered notebook * fix indentation
CryoInTheCloud · Dec 9, 2023 · 8978549 · 8978549
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diff --git a/book/_toc.yml b/book/_toc.yml
@@ -47,6 +47,11 @@ parts:
         - file: tutorials/IS2_ATL15_surface_height_anomalies/IS2_ATL15_surface_height_anomalies
         - file: external/ICESAT2_ATL10-h5coro_large_scale_time_series
         - file: tutorials/ARCOdata_writingZarrs
+          sections:
+          - file: tutorials/NASA-Earthdata-Cloud-Access/1.Intro-Earthdata-Cloud
+          - file: tutorials/NASA-Earthdata-Cloud-Access/2.earthdata_search
+          - file: tutorials/NASA-Earthdata-Cloud-Access/3.earthaccess
+          - file: tutorials/NASA-Earthdata-Cloud-Access/4.icepyx
         - file: tutorials/GrIMP/GrIMP_tutorial_AGU23
         - file: tutorials/SlideRule_applications/SlideRule_applications
 - caption: Contributing

diff --git a/...-Cloud-Access/1. Intro-Earthdata-Cloud.md → ...a-Cloud-Access/1.Intro-Earthdata-Cloud.md b/...-Cloud-Access/1. Intro-Earthdata-Cloud.md → ...a-Cloud-Access/1.Intro-Earthdata-Cloud.md
diff --git a/...hdata-Cloud-Access/2. earthdata_search.md → ...thdata-Cloud-Access/2.earthdata_search.md b/...hdata-Cloud-Access/2. earthdata_search.md → ...thdata-Cloud-Access/2.earthdata_search.md
diff --git a/...rthdata-Cloud-Access/3. earthaccess.ipynb → ...arthdata-Cloud-Access/3.earthaccess.ipynb b/...rthdata-Cloud-Access/3. earthaccess.ipynb → ...arthdata-Cloud-Access/3.earthaccess.ipynb
diff --git a/...SA-Earthdata-Cloud-Access/4. icepyx.ipynb → ...ASA-Earthdata-Cloud-Access/4.icepyx.ipynb b/...SA-Earthdata-Cloud-Access/4. icepyx.ipynb → ...ASA-Earthdata-Cloud-Access/4.icepyx.ipynb
@@ -739,6 +739,7 @@
    "source": [
     "import json\n",
     "import math\n",
+    "import warnings\n",
     "\n",
     "import numpy as np\n",
     "import matplotlib.pyplot as plt\n",
@@ -1414,16 +1415,6 @@
     "tags": []
    },
    "outputs": [
-    {
-     "name": "stderr",
-     "output_type": "stream",
-     "text": [
-      "/srv/conda/envs/notebook/lib/python3.10/site-packages/icepyx/core/read.py:520: UserWarning: rename 'delta_time' to 'photon_idx' does not create an index anymore. Try using swap_dims instead or use set_index after rename to create an indexed coordinate.\n",
-      "  .rename({\"delta_time\": \"photon_idx\"})\n",
-      "/srv/conda/envs/notebook/lib/python3.10/site-packages/icepyx/core/read.py:520: UserWarning: rename 'delta_time' to 'photon_idx' does not create an index anymore. Try using swap_dims instead or use set_index after rename to create an indexed coordinate.\n",
-      "  .rename({\"delta_time\": \"photon_idx\"})\n"
-     ]
-    },
     {
      "data": {
       "text/html": [
@@ -2050,7 +2041,10 @@
     }
    ],
    "source": [
-    "ds = reader.load()\n",
+    "# turn off warnings for load to not show an xarray warning that was resolved in the coming release of icepyx v1.0.0\n",
+    "with warnings.catch_warnings(record=True):    \n",
+    "    ds = reader.load()\n",
+    "\n",
     "ds"
    ]
   },
@@ -2184,20 +2178,6 @@
    "id": "47fc67bb-5eba-4481-8dae-bc7248d09c91",
    "metadata": {},
    "outputs": [
-    {
-     "name": "stderr",
-     "output_type": "stream",
-     "text": [
-      "/srv/conda/envs/notebook/lib/python3.10/site-packages/icepyx/core/read.py:520: UserWarning: rename 'delta_time' to 'photon_idx' does not create an index anymore. Try using swap_dims instead or use set_index after rename to create an indexed coordinate.\n",
-      "  .rename({\"delta_time\": \"photon_idx\"})\n",
-      "/srv/conda/envs/notebook/lib/python3.10/site-packages/icepyx/core/read.py:520: UserWarning: rename 'delta_time' to 'photon_idx' does not create an index anymore. Try using swap_dims instead or use set_index after rename to create an indexed coordinate.\n",
-      "  .rename({\"delta_time\": \"photon_idx\"})\n",
-      "/srv/conda/envs/notebook/lib/python3.10/site-packages/icepyx/core/read.py:520: UserWarning: rename 'delta_time' to 'photon_idx' does not create an index anymore. Try using swap_dims instead or use set_index after rename to create an indexed coordinate.\n",
-      "  .rename({\"delta_time\": \"photon_idx\"})\n",
-      "/srv/conda/envs/notebook/lib/python3.10/site-packages/icepyx/core/read.py:520: UserWarning: rename 'delta_time' to 'photon_idx' does not create an index anymore. Try using swap_dims instead or use set_index after rename to create an indexed coordinate.\n",
-      "  .rename({\"delta_time\": \"photon_idx\"})\n"
-     ]
-    },
     {
      "data": {
       "text/html": [
@@ -2642,8 +2622,11 @@
     }
    ],
    "source": [
-    "# load the dataset\n",
-    "ds_photons = reader.load()\n",
+    "# turn off warnings for load to not show an xarray warning that was resolved in the coming release of icepyx v1.0.0\n",
+    "with warnings.catch_warnings(record=True):\n",
+    "    # load the dataset\n",
+    "    ds_photons = reader.load()\n",
+    "    \n",
     "ds_photons"
    ]
   },
@@ -2774,16 +2757,6 @@
    "id": "25272b20-5b03-4213-af06-1d73799fab70",
    "metadata": {},
    "outputs": [
-    {
-     "name": "stderr",
-     "output_type": "stream",
-     "text": [
-      "/srv/conda/envs/notebook/lib/python3.10/site-packages/icepyx/core/read.py:520: UserWarning: rename 'delta_time' to 'photon_idx' does not create an index anymore. Try using swap_dims instead or use set_index after rename to create an indexed coordinate.\n",
-      "  .rename({\"delta_time\": \"photon_idx\"})\n",
-      "/srv/conda/envs/notebook/lib/python3.10/site-packages/icepyx/core/read.py:520: UserWarning: rename 'delta_time' to 'photon_idx' does not create an index anymore. Try using swap_dims instead or use set_index after rename to create an indexed coordinate.\n",
-      "  .rename({\"delta_time\": \"photon_idx\"})\n"
-     ]
-    },
     {
      "data": {
       "text/html": [
@@ -3405,8 +3378,11 @@
     }
    ],
    "source": [
-    "# load the data\n",
-    "ds_te = reader.load()\n",
+    "# turn off warnings for load to not show an xarray warning that was resolved in the coming release of icepyx v1.0.0\n",
+    "with warnings.catch_warnings(record=True):\n",
+    "    # load the data\n",
+    "    ds_te = reader.load()\n",
+    "    \n",
     "ds_te"
    ]
   },