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Here are just a few quick notes, they could use polish and checks for accuracy:
BOLD_NOT_4D and NIFTI_PIXDIM4 (usually same subject lists)- for func runs - likely means the func run only has 1 volume. these aren't usable and should be removed from the BIDS inputs
INCONSISTENT_PARAMETERS - func runs - sometimes this just means that not all the func runs have the same number of frames for example, which isn't unusual and can be ignored
INTENDED_FOR - could mean that the json is missing, the IF field is blank, the file path in the IF field isn't accurate (I believe it should be formatted as ses-XXX/func/run1.nii.gz for example starting at session level), etc
PHASE_ENCODING_DIRECTION_MUST_DEFINE & TOTAL_READOUT_TIME_MUST_DEFINE - could either mean that these fields are missing or blank in the jsons, or that the json files themselves are missing
VOLUME_COUNT_MISMATCH - I don't remember this one off the top of my head. might mean something is wrong with dwi file and it should be discarded similar to BOLD_NOT_4D for func runs
The text was updated successfully, but these errors were encountered:
Here are just a few quick notes, they could use polish and checks for accuracy:
ses-XXX/func/run1.nii.gz
for example starting at session level), etcThe text was updated successfully, but these errors were encountered: