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@DIAGNijmegen

Diagnostic Image Analysis Group

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  1. neural-odes-segmentation neural-odes-segmentation Public

    Neural Ordinary Differential Equations for Semantic Segmentation of Individual Colon Glands

    Python 107 28

  2. StreamingCNN StreamingCNN Public

    To train deep convolutional neural networks, the input data and the activations need to be kept in memory. Given the limited memory available in current GPUs, this limits the maximum dimensions of …

    Jupyter Notebook 98 22

  3. pathology-whole-slide-data pathology-whole-slide-data Public

    A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.

    Python 96 27

  4. pathology-streaming-pipeline pathology-streaming-pipeline Public

    Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.

    Python 75 10

  5. pathology-hooknet pathology-hooknet Public

    Jupyter Notebook 54 10

  6. pathology-he-auto-augment pathology-he-auto-augment Public

    H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.

    Python 51 7

Repositories

Showing 10 of 158 repositories
  • website-content Public

    This repository stores all the content for the diag websites.

    DIAGNijmegen/website-content’s past year of commit activity
    TeX 6 MIT 76 27 (1 issue needs help) 14 Updated Dec 10, 2024
  • picai_prep Public

    Preprocessing 3D medical images and image archives —geared towards prostate cancer detection in MRI.

    DIAGNijmegen/picai_prep’s past year of commit activity
    Python 19 Apache-2.0 5 0 0 Updated Dec 10, 2024
  • Literature Public

    The literature generated and cited by the group

    DIAGNijmegen/Literature’s past year of commit activity
    TeX 0 3 0 0 Updated Dec 10, 2024
  • rse-pyswot Public

    Python implementation of JetBrains/swot

    DIAGNijmegen/rse-pyswot’s past year of commit activity
    Python 1 Apache-2.0 1 0 0 Updated Dec 10, 2024
  • pathology-whole-slide-learning Public

    library for weak whole slide learning with attention to compress and classify whole slide images

    DIAGNijmegen/pathology-whole-slide-learning’s past year of commit activity
    Python 0 Apache-2.0 1 1 0 Updated Dec 8, 2024
  • pathology-whole-slide-packer Public

    extracts tissue sections from one or multiple whole slide images and combines them into a single new slide removing excess white space

    DIAGNijmegen/pathology-whole-slide-packer’s past year of commit activity
    Python 5 Apache-2.0 1 0 0 Updated Dec 8, 2024
  • rse-cirrus-benchmark-suite Public

    A small playwright-based CIRRUS benchmark suite, meant to detect speedups or slowdowns.

    DIAGNijmegen/rse-cirrus-benchmark-suite’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Dec 5, 2024
  • Report-Guided-Annotation Public

    Report Guided Annotation

    DIAGNijmegen/Report-Guided-Annotation’s past year of commit activity
    Python 19 MIT 6 2 0 Updated Dec 2, 2024
  • demo-challenge-pack Public

    Challenge pack for the demo challenge

    DIAGNijmegen/demo-challenge-pack’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Nov 28, 2024
  • dragon_prep Public

    Preprocessing scripts for the DRAGON benchmark

    DIAGNijmegen/dragon_prep’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Nov 26, 2024