Merge pull request #312 from ldecicco-USGS/master

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DOI-USGS · Mar 24, 2019 · 199c840 · 199c840
2 parents 4b8cf4b + b8bfbc1
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Showing 38 changed files with 47 additions and 47 deletions.
diff --git a/R/plot_group_boxplots.R b/R/plot_group_boxplots.R
@@ -72,7 +72,7 @@
 #'                               category = "Biological") 
 #' cbValues <- colorRampPalette(cbPalette)(length(levels(graphData$category)))
 #' names(cbValues) <- levels(graphData$category)
-#' 
+#' \donttest{
 #' plot_tox_boxplots(chemical_summary, 
 #'                   hit_threshold = 0.1,
 #'                   category = "Biological",
@@ -83,6 +83,7 @@
 #'                   category = "Biological") 
 #' plot_tox_boxplots(single_site, 
 #'                   category = "Chemical", hit_threshold = 0.001) 
+#'}
 plot_tox_boxplots <- function(chemical_summary, 
                               category = "Biological",
                               manual_remove = NULL,

diff --git a/_pkgdown.yml b/_pkgdown.yml
@@ -10,7 +10,7 @@ navbar:
     href: articles/basicWorkflow.html
   - text: Function Help
     href: reference/index.html
-  - text: Data Preperation
+  - text: Data Preparation
     href: articles/PrepareData.html
   - text: Articles
     menu:

diff --git a/docs/CONDUCT.html b/docs/CONDUCT.html
diff --git a/docs/DISCLAIMER.html b/docs/DISCLAIMER.html
diff --git a/docs/articles/Introduction.html b/docs/articles/Introduction.html
diff --git a/docs/articles/PrepareData.html b/docs/articles/PrepareData.html
diff --git a/docs/articles/basicWorkflow.html b/docs/articles/basicWorkflow.html
diff --git a/docs/articles/benchmarks.html b/docs/articles/benchmarks.html
diff --git a/docs/articles/does_curves.html b/docs/articles/does_curves.html
diff --git a/docs/articles/index.html b/docs/articles/index.html
diff --git a/docs/articles/shinyApp.html b/docs/articles/shinyApp.html
diff --git a/docs/authors.html b/docs/authors.html
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/reference/ToxCast_ACC.html b/docs/reference/ToxCast_ACC.html
diff --git a/docs/reference/clean_endPoint_info.html b/docs/reference/clean_endPoint_info.html
diff --git a/docs/reference/createLink.html b/docs/reference/createLink.html
diff --git a/docs/reference/create_toxEval.html b/docs/reference/create_toxEval.html
diff --git a/docs/reference/end_point_info.html b/docs/reference/end_point_info.html
diff --git a/docs/reference/endpoint_hits_DT.html b/docs/reference/endpoint_hits_DT.html
diff --git a/docs/reference/explore_endpoints.html b/docs/reference/explore_endpoints.html
diff --git a/docs/reference/filter_groups.html b/docs/reference/filter_groups.html
diff --git a/docs/reference/get_ACC.html b/docs/reference/get_ACC.html
diff --git a/docs/reference/get_chemical_summary.html b/docs/reference/get_chemical_summary.html
diff --git a/docs/reference/helperToxEval.html b/docs/reference/helperToxEval.html
diff --git a/docs/reference/hits_by_groupings_DT.html b/docs/reference/hits_by_groupings_DT.html
diff --git a/docs/reference/hits_summary_DT.html b/docs/reference/hits_summary_DT.html
diff --git a/docs/reference/index.html b/docs/reference/index.html
diff --git a/docs/reference/make_tox_map.html b/docs/reference/make_tox_map.html
diff --git a/docs/reference/plot_tox_boxplots.html b/docs/reference/plot_tox_boxplots.html
diff --git a/docs/reference/plot_tox_endpoints.html b/docs/reference/plot_tox_endpoints.html
diff --git a/docs/reference/plot_tox_heatmap.html b/docs/reference/plot_tox_heatmap.html
diff --git a/docs/reference/plot_tox_stacks.html b/docs/reference/plot_tox_stacks.html
diff --git a/docs/reference/rank_sites_DT.html b/docs/reference/rank_sites_DT.html
diff --git a/docs/reference/remove_flags.html b/docs/reference/remove_flags.html
diff --git a/docs/reference/summary.toxEval.html b/docs/reference/summary.toxEval.html
diff --git a/docs/reference/toxEval-package.html b/docs/reference/toxEval-package.html