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37 Open 41 Closed
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Issues list

Different NA12892 HLA results from tutorial
#85 opened Oct 19, 2024 by Tesson98
1
How can we increase the number of alleles that the most number of reads are mapped?
#84 opened May 20, 2024 by jayminz
Hisatgenotype is taking too much of time to run on samples
#83 opened May 18, 2024 by likhitha99
1
forgot to build hisat2 executables?
#82 opened Apr 11, 2024 by Januaryyiyue
Hisat-genotype run since more than 24h without writting anything or do anything...
#81 opened Mar 13, 2024 by GKerdivel
5
How to add Custom VCF Data for HLA Typing with HISAT-genotype
#80 opened Mar 12, 2024 by allen890205
Unable to download genotype_genome_20180128.tar.gz
#79 opened Dec 28, 2023 by KhooWuiSeng
2
Error when running tutorials code with --assembly
#77 opened Jun 10, 2023 by Runda-Xu
I have some WES data - GRCh37
#76 opened May 3, 2023 by Pharmacogenetecist
1
How does hisatgenotype handle duplicate reads?
#75 opened Apr 5, 2023 by yingchen69
manual installation failed!
#74 opened Mar 23, 2023 by yingchen69
custom genome to assemble loci
#73 opened Dec 21, 2022 by wyim-pgl
Please allow hisatgenotype to run with absolute paths
#72 opened Nov 10, 2022 by bozbezbozzel
Unable to run hisatgenotype with pre-aligned data
#71 opened May 9, 2022 by ryanalomair
1
How does HISAT-genotype predict its initial alleles in RNA Seq-data?
#70 opened Apr 22, 2022 by PhilippMueller24
Building a Graph Reference and Index
#69 opened Apr 19, 2022 by jhylwq123
2
Is it possible to get heterozygous or homozygous information for a certain HLA allele in hisat?
#68 opened Apr 12, 2022 by jhylwq123
No indicies/hla_backbone.fa file found
#67 opened Apr 10, 2022 by aforsythe
2
Build Fails on MacOS 12.2.1
#66 opened Apr 8, 2022 by aforsythe
1
Python 3 and issue with indexing
#65 opened Jan 20, 2022 by dcolomb1
1
No ranked alleles after EM step
#64 opened Jan 10, 2022 by eugbrenner
Weird running behavior
#61 opened Sep 24, 2021 by bcantarel
update DB
#60 opened Jul 28, 2021 by ghost
6
HLA typing on Nanopore or PacBio data
#55 opened Mar 22, 2021 by kokyriakidis
7
parse-results: misaligned columns in output csv
#54 opened Mar 19, 2021 by nikyk
@chbe-helix
ProTip! no:milestone will show everything without a milestone.