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| Original file line number | Diff line number | Diff line change |
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| - name: Chanhee Park | ||
| url: /chanhee.park/ | ||
| - name: Ben Langmead | ||
| url: http://www.langmead-lab.org/ | ||
| - name: Steven Salzberg | ||
| url: https://salzberg-lab.org/in-the-news/about-me/ | ||
| - name: Daehwan Kim | ||
| url: https://kim-lab.org/daehwan-kim-principal-investigator/ |
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@@ -70,27 +70,62 @@ <h1 class="clearfix"> | |
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| <aside class="site-aside"> | ||
| <div class="inner"> | ||
| <div class="block"> | ||
| <div class="block"> | ||
| <form action="{{ site.baseurl }}/search"> | ||
| <input type="search" id="search" name="q" placeholder="{{ site.str_search }}" /> | ||
| </form> | ||
| </div> | ||
| </div> | ||
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| <div class="block"> | ||
| <ul> | ||
| {% assign pages = site.pages | sort: 'order' %} | ||
| {% assign pages = site.pages | where: "category", "main" | sort: 'order' %} | ||
| {% for page in pages %} | ||
| {% if page.title and page.hide != true %} | ||
| <li><a class="page-link" href="{{ page.url | prepend: site.baseurl }}">{{ page.title }}</a></li> | ||
| {% endif %} | ||
| {% endfor %} | ||
| </ul> | ||
| </div> | ||
| <!-- | ||
| <ul class="icons"> | ||
| {% include icons.html icons=site.icons %} | ||
| </ul> | ||
| <hr class="with-no-margin margin-bottom"/> | ||
| --> | ||
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| <div class="block"> | ||
| <h2>Getting Help</h2> | ||
| <br> | ||
| Please use <a href="mailto:[email protected]">[email protected]</a> for private communications only. Please do not email technical questions to HISAT2 contributors directly. | ||
| </div> | ||
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| <div class="block"> | ||
| <h2>Publications</h2> | ||
| <div style="font-size: 0.8em"> | ||
| <ul> | ||
| <li>Kim, D., Paggi, J.M., Park, C. <i>et al.</i> <a class="publication" href="https://doi.org/10.1038/s41587-019-0201-4">Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype.</a> <a class="publication" href="https://www.nature.com/nbt/"><i>Nat Biotechnol</i></a> <b>37</b>, 907–915 (2019).</li> | ||
| <li>Kim D, Langmead B and Salzberg SL. <a class="publication" href="https://doi.org/10.1038/nmeth.3317">HISAT: a fast spliced aligner with low memory requirements.</a> <a class="publication" href="https://www.nature.com/nmeth/"><i>Nature Methods</i></a> 2015</li> | ||
| <li>Pertea M, Kim D, Pertea G, Leek JT and Salzberg SL. <a class="publication" href="https://doi.org/10.1038/nprot.2016.095">Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown.</a> <a class="publication" href="https://www.nature.com/nprot/"><i>Nature Protocols</i></a> 2016</li> | ||
| </ul> | ||
| </div> | ||
| </div> | ||
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| <div class="block"> | ||
| <h2>Contributors</h2> | ||
| <ul> | ||
| {% for item in site.data.contributor %} | ||
| <li> | ||
| {% if item.url contains "http://" or item.url contains "https://" %} | ||
| <a class="page-link" href="{{ item.url }}">{{ item.name }}</a> | ||
| {% else %} | ||
| <a class="page-link" href="{{ item.url | prepend: site.baseurl }}">{{ item.name }}</a> | ||
| {% endif %} | ||
| </li> | ||
| {% endfor %} | ||
| </ul> | ||
| </div> | ||
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| {% if site.data.collaborate %} | ||
| <div class="block"> | ||
| {% for item in site.data.collaborate %} | ||
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| </div> | ||
| {% endif %} | ||
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| {% endfor %} | ||
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| Original file line number | Diff line number | Diff line change |
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| --- | ||
| layout: page | ||
| title: Chanhee Park | ||
| permalink: /chanhee.park/ | ||
| order: 1 | ||
| share: false | ||
| category: contributor | ||
| --- | ||
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| Chanhee Park is a Scientific Software Engineer in the Kim Lab at UTSW responsible for maintaining and improving HISAT2. | ||
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| [Linkedin](https://www.linkedin.com/in/chanhee-park-97677297/) |
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| Original file line number | Diff line number | Diff line change |
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| --- | ||
| layout: page | ||
| title: Links | ||
| permalink: /links/ | ||
| order: 6 | ||
| share: false | ||
| --- | ||
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| * KimLab - <https://kim-lab.org> | ||
| * github - <https://github.com/DaehwanKimLab> | ||
| * hisat-genotype - <https://daehwankimlab.github.io/hisat-genotype> | ||
| * github for hisat-genotype - <https://github.com/DaehwanKimLab/hisat-genotype> | ||
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| * Lyda Hill Department of Bioinformatics at UT Southwestern Medical Center - <https://www.utsouthwestern.edu/departments/bioinformatics> | ||
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| * Center for Computational Biology at Johns Hopkins University - <http://www.ccb.jhu.edu> | ||
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