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infphilo committed Jun 8, 2017
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2 changes: 1 addition & 1 deletion Makefile
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.PHONY: push-doc
push-doc: doc/manual.inc.html
scp doc/*.*html igm1:/data1/igm3/www/ccb.jhu.edu/html/software/hisat2/
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2 changes: 1 addition & 1 deletion doc/index.shtml
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<h2>HISAT2 2.1.0 release 6/8/2017</h2>
<ul>
<li>This major version includes the first release of HISAT-genotype, which currently performs HLA typing, DNA fingerprinting analysis, and CYP typing on whole genome sequencing (WGS) reads. We plan to extend the system so that it can analyze not just a few genes, but a whole human genome. Please refer to <a href="http://ccb.jhu.edu/hisat-genotype">the HISAT-genotype website</a> for more details.</li>
<li>HISAT2 can be directly compiled and executed on Windows system using Visual Studio, thanks to <a href="http://www2.warwick.ac.uk/fac/sci/systemsbiology/staff/dyer/"Nigel Dyer.</a> </li>
<li>HISAT2 can be directly compiled and executed on Windows system using Visual Studio, thanks to <a href="http://www2.warwick.ac.uk/fac/sci/systemsbiology/staff/dyer/"> Nigel Dyer.</a> </li>
<li>Implemented --new-summary option to output a new style of alignment summary, which is easier to parse for programming purposes.</li>
<li>Implemented --summary-file option to output alignment summary to a file in addition to the terminal (e.g. stderr).</li>
<li>Implemented --no-templatelen-adjustment option to disable automatic template length adjustment for RNA-seq reads.</li>
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