Option to hide windows in ple calculation

Use flag hideWindows to hide calculation of ple and waitbar.
Use flag ar.config.noWaitBarWindow to move waitbar to command line output in general.
Use flag ar.config.noWaitBar to hide waitbar completely.

arFramework3/MatlabTools/arWaitbar.m

@@ -20,12 +20,16 @@ function arWaitbar(j, n, text)
 global arWaitbarGlobal;
 global arOutputLevel;
 
+global ar;		
 % disable waitbar window and use command line output instead
-if ~isfield(arWaitbarGlobal,'showWindow')
-    arWaitbarGlobal.showWindow = 1;
+if ( isfield( ar, 'config' ) && isfield( ar.config, 'noWaitBarWindow' ) && ar.config.noWaitBarWindow == 1 )
+    arWaitbarGlobal.showWindow = 0;
+else
+    if ~isfield(arWaitbarGlobal,'showWindow')
+        arWaitbarGlobal.showWindow = 1;
+    end
 end
 
-global ar;		
 if ( isfield( ar, 'config' ) && isfield( ar.config, 'noWaitBar' ) && ar.config.noWaitBar == 1 )		
     return;		
 end
@@ -116,7 +120,7 @@ function arWaitbar(j, n, text)
                         sprintf('%s\n%i/%i   %2i%%   %s -> %s%s', ...
                         strrep(text, '_','\_'), j, n, round(j/n*100), secToHMS(timeleft), secToHMS(timeelapsed), funtext));
                 else
-                    fprintf('%s %i/%i   %2i%%   %s -> %s%s\n', ...
+                    fprintf('%s %i/%i   %2i%%  Estimated: %s -> Elapsed: %s%s\n', ...
                         strrep(text, '_','\_'), j, n, round(j/n*100), secToHMS(timeleft), secToHMS(timeelapsed), funtext); 
                     drawnow;
                 end

arFramework3/PLE/ple.m

@@ -1,4 +1,4 @@
-% ple([i], [samplesize], [relchi2stepincrease], [maxstepsize], [minstepsize], [breakonbounds], [doLeftRightBranch])
+% ple([i], [samplesize], [relchi2stepincrease], [maxstepsize], [minstepsize], [breakonbounds], [doLeftRightBranch],[hideWindows])
 % 
 % Profile Likelihood Exploit
 %
@@ -18,6 +18,8 @@
 %                         break regardless for the profile parameter if it
 %                         reaches the boundary.
 %   doLeftRightBranch     calculate left/right branch         [true true]
+%   hideWindows           hide windows of calculation and     [false]
+%                         wait bar
 % 
 % The profile likelihood calculation by the functions ple* was intended
 % as running independent of D2D, i.e. it was intended to be also used by
@@ -29,7 +31,7 @@
 % See also: arPLEInit, pleExtend, pleSmooth
 
 function ple(jk, samplesize, relchi2stepincrease, ...
-    maxstepsize, minstepsize, breakonlb, breakonub, doLeftRightBranch)
+    maxstepsize, minstepsize, breakonlb, breakonub, doLeftRightBranch,hideWindows)
 
 global ar
 
@@ -89,6 +91,14 @@ function ple(jk, samplesize, relchi2stepincrease, ...
     doLeftRightBranch = [true true];
 end
 
+if(~exist('hideWindows','var') || isempty(hideWindows))
+    hideWindows = false;
+end
+if hideWindows == true
+    ar.ple.showCalculation = false;
+    ar.config.noWaitBarWindow = true;
+end
+
 % Specifications on what to do if there are more than 1 parameter. The
 % function ple will evaluate itself for every parameter separately.
 if(nargin<1)