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@DataBiosphere

Data Biosphere

We are creating a vibrant ecosystem of interoperable modules and data environments for the biomedical community.

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  1. toil toil Public

    A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

    Python 908 240

  2. dsub dsub Public

    Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.

    Python 266 45

  3. terra-ui terra-ui Public

    Web user interface for the Terra platform

    TypeScript 53 21

  4. leonardo leonardo Public

    Notebook service

    Scala 44 21

  5. terra-docker terra-docker Public

    Jupyter Notebook 27 34

  6. job-manager job-manager Public

    Job Manager API and UI for interacting with asynchronous batch jobs and workflows.

    TypeScript 26 5

Repositories

Showing 10 of 160 repositories
  • terra-common-lib Public
    DataBiosphere/terra-common-lib’s past year of commit activity
    Java 0 BSD-3-Clause 0 0 3 Updated Mar 1, 2025
  • stairway Public

    Stairway saga transaction processor library

    DataBiosphere/stairway’s past year of commit activity
    Java 2 BSD-3-Clause 1 0 1 Updated Mar 1, 2025
  • azul Public

    Metadata indexer and query service used for AnVIL, HCA, LungMAP, and CGP

    DataBiosphere/azul’s past year of commit activity
    Python 8 Apache-2.0 2 654 14 Updated Mar 1, 2025
  • tanagra Public

    Repo for the Tanagra service being developed by the All of Us DRC

    DataBiosphere/tanagra’s past year of commit activity
    Java 2 BSD-3-Clause 1 0 14 Updated Mar 1, 2025
  • data-browser Public
    DataBiosphere/data-browser’s past year of commit activity
    Jupyter Notebook 11 Apache-2.0 4 93 2 Updated Feb 28, 2025
  • jade-data-repo-ui Public

    UI for the Jade Data Repo

    DataBiosphere/jade-data-repo-ui’s past year of commit activity
    TypeScript 4 BSD-3-Clause 1 0 2 Updated Feb 28, 2025
  • terra-ui Public

    Web user interface for the Terra platform

    DataBiosphere/terra-ui’s past year of commit activity
    TypeScript 53 BSD-3-Clause 21 145 10 Updated Feb 28, 2025
  • toil Public

    A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

    DataBiosphere/toil’s past year of commit activity
    Python 908 Apache-2.0 240 392 (1 issue needs help) 15 Updated Feb 28, 2025
  • terra-external-credentials-manager Public
    DataBiosphere/terra-external-credentials-manager’s past year of commit activity
    Java 4 BSD-3-Clause 0 0 4 Updated Feb 28, 2025
  • findable-ui Public
    DataBiosphere/findable-ui’s past year of commit activity
    TypeScript 1 Apache-2.0 0 20 0 Updated Feb 28, 2025
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