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@DavisLaboratory

Davis Laboratory

Computational systems oncology lab at the South Australian Immunogenomics Cancer Institute (SAiGENCI)

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  1. singscore singscore Public

    An R/Bioconductor package that implements a single-sample molecular phenotyping approach

    R 40 5

  2. standR standR Public

    Spatial transcriptomics analyses and decoding in R

    R 17 4

  3. msImpute msImpute Public

    Methods for label-free mass spectrometry proteomics

    R 14

  4. vissE vissE Public

    An R/Bioconductor package to identify higher-order molecular phenotypes

    R 12 1

  5. scDECAF scDECAF Public

    Reference-free celltype and phenotype annotation in single cell RNAseq by learning geneset representations

    R 11 3

  6. NK_scoring NK_scoring Public

    HTML 8 3

Repositories

Showing 10 of 49 repositories
  • hoodscanR Public
    DavisLaboratory/hoodscanR’s past year of commit activity
    R 4 GPL-3.0 0 0 0 Updated Aug 13, 2024
  • standR Public

    Spatial transcriptomics analyses and decoding in R

    DavisLaboratory/standR’s past year of commit activity
    R 17 4 7 0 Updated Aug 12, 2024
  • msigdb Public

    A R/Bioconductor ExperimentHub package to access gene expression signatures in the Molecular Signatures Database (MSigDB).

    DavisLaboratory/msigdb’s past year of commit activity
    R 3 CC-BY-4.0 2 2 1 Updated Aug 8, 2024
  • nf_modules Public

    Modules for scripting with nextflow

    DavisLaboratory/nf_modules’s past year of commit activity
    Nextflow 0 0 4 0 Updated Jul 24, 2024
  • peptideprotonet_reproducibility Public

    Scripts and notebooks to reproduce figures for the peptideprotonet manuscript

    DavisLaboratory/peptideprotonet_reproducibility’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jul 15, 2024
  • SubcellularSpatialData Public

    This repository hosts a data package with annotated sub-cellular resolution spatial transcriptomics datasets.

    DavisLaboratory/SubcellularSpatialData’s past year of commit activity
    R 1 GPL-3.0 1 0 0 Updated Jul 11, 2024
  • dcanr Public

    Differential co-expression/association network analysis

    DavisLaboratory/dcanr’s past year of commit activity
    R 6 3 0 0 Updated Jul 5, 2024
  • scDECAF Public

    Reference-free celltype and phenotype annotation in single cell RNAseq by learning geneset representations

    DavisLaboratory/scDECAF’s past year of commit activity
    R 11 3 1 0 Updated Jul 4, 2024
  • smartid Public

    An R package for Scoring and Marker Selection Based on Modified TF-IDF

    DavisLaboratory/smartid’s past year of commit activity
    R 1 1 0 0 Updated May 26, 2024
  • mastR Public

    An R package for automatically screening cell type signature in specific tissue/organ/cancer.

    DavisLaboratory/mastR’s past year of commit activity
    R 4 1 0 0 Updated Apr 29, 2024
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