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Addition of workflow report
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Delphine-L committed Aug 13, 2024
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# Changelog

## [0.1.4] 2024-08-13

- Addition of workflow report

## [0.1.3] 2024-04-01

### Automatic update
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{
"a_galaxy_workflow": "true",
"annotation": "",
"comments": [],
"creator": [
{
"class": "Organization",
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],
"format-version": "0.1",
"license": "CC-BY-4.0",
"release": "0.1.3",
"release": "0.1.4",
"name": "Scaffolding-BioNano-VGP7",
"report": {
"markdown": "\n# Workflow Execution Report\n\n## Invocation time\n```galaxy\ninvocation_time()\n```\n\n## Assembly statistics\n\n```galaxy\nhistory_dataset_as_table(output=\"clean_stats\")\n```\n\n## Size plot\n\n\n```galaxy\nhistory_dataset_as_image(output=\"Size Plot\")\n```\n\n\n## Nx plot\n```galaxy\nhistory_dataset_as_image(output=\"Nx Plot\")\n```\n\n\n## Workflow\n```galaxy\nworkflow_display()\n```\n"
},
"steps": {
"0": {
"annotation": "",
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"type": "data_input",
"uuid": "404dfe4f-8590-486e-b632-a0564010e213",
"when": null,
"workflow_outputs": [
{
"label": null,
"output_name": "output",
"uuid": "5957fae6-c14a-464a-aedb-0695d68d69dd"
}
]
"workflow_outputs": []
},
"4": {
"annotation": "",
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"output_name": "output"
}
},
"inputs": [
{
"description": "runtime parameter for tool gfastats",
"name": "mode_condition"
}
],
"inputs": [],
"label": null,
"name": "gfastats",
"outputs": [
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"output_name": "ngs_contigs_scaffold_agp"
}
},
"inputs": [
{
"description": "runtime parameter for tool gfastats",
"name": "mode_condition"
}
],
"inputs": [],
"label": null,
"name": "gfastats",
"outputs": [
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"output_name": "output"
}
},
"inputs": [
{
"description": "runtime parameter for tool gfastats",
"name": "mode_condition"
}
],
"inputs": [],
"label": null,
"name": "gfastats",
"outputs": [
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},
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"content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/9.3+galaxy1",
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"input_connections": {
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"output_name": "stats"
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},
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"name": "Replace",
"outputs": [
{
"name": "outfile",
"type": "input"
}
],
"position": {
"left": 2430.427837638421,
"top": 236.31263207430692
},
"post_job_actions": {
"HideDatasetActionoutfile": {
"action_arguments": {},
"action_type": "HideDatasetAction",
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"tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/9.3+galaxy1",
"tool_shed_repository": {
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"name": "text_processing",
"owner": "bgruening",
"tool_shed": "toolshed.g2.bx.psu.edu"
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"tool_state": "{\"find_and_replace\": [{\"__index__\": 0, \"find_pattern\": \"#\", \"replace_pattern\": \"Number of\", \"is_regex\": false, \"global\": true, \"caseinsensitive\": false, \"wholewords\": false, \"skip_first_line\": false, \"searchwhere\": {\"searchwhere_select\": \"line\", \"__current_case__\": 0}}], \"infile\": {\"__class__\": \"RuntimeValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
"tool_version": "9.3+galaxy1",
"type": "tool",
"uuid": "292e7cba-fa66-4f7e-935d-504d64a304cc",
"when": null,
"workflow_outputs": [
{
"label": "clean_stats",
"output_name": "outfile",
"uuid": "4a0bdf73-d0f9-4c54-9c82-9a63e19e4695"
}
]
},
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"input_connections": {
"gfa_stats": {
"id": 10,
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]
}
},
"tags": "",
"tags": [],
"uuid": "0d43f853-69ee-4f89-9a1d-50cfa45ec0fd"
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"tool_id": null,
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"when": null,
"workflow_outputs": []
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"content_id": "Cut1",
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"output_name": "gfastats data for plotting"
}
},
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"when": null,
"workflow_outputs": []
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"14": {
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"content_id": "Cut1",
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"output_name": "gfastats data for plotting"
}
},
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"when": null,
"workflow_outputs": []
},
"14": {
"15": {
"annotation": "",
"content_id": "toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/3.4.0+galaxy1",
"errors": null,
"id": 14,
"id": 15,
"input_connections": {
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"output_name": "out_file1"
}
},
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}
]
},
"15": {
"16": {
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"content_id": "toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/3.4.0+galaxy1",
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},
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"tags": [
"VGP_curated"
],
"uuid": "0c8b790c-4dce-4e9b-b942-da71a9e9b27e",
"version": 5
"uuid": "9fd3c0de-a497-47dc-96e3-0f3e1998173d",
"version": 6
}

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