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Updating workflows/bacterial_genomics/bacterial_genome_annotation fro…
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…m 1.1.2 to 1.1.3 (galaxyproject#518)

Co-authored-by: planemo-autoupdate <[email protected]>
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gxydevbot and planemo-autoupdate authored Sep 9, 2024
1 parent c7a5ac4 commit a2c2012
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# Changelog

## [1.1.3] 2024-09-09

### Automatic update
- `toolshed.g2.bx.psu.edu/repos/iuc/bakta/bakta/1.9.3+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/bakta/bakta/1.9.4+galaxy0`

## [1.1.2] - 2024-07-19

- PlasmidFinder database correction in .ga
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],
"format-version": "0.1",
"license": "GPL-3.0-or-later",
"release": "1.1.2",
"release": "1.1.3",
"name": "bacterial_genome_annotation",
"steps": {
"0": {
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},
"7": {
"annotation": "",
"content_id": "toolshed.g2.bx.psu.edu/repos/iuc/bakta/bakta/1.9.3+galaxy0",
"content_id": "toolshed.g2.bx.psu.edu/repos/iuc/bakta/bakta/1.9.4+galaxy0",
"errors": null,
"id": 7,
"input_connections": {
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"output_name": "summary_txt"
}
},
"tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/bakta/bakta/1.9.3+galaxy0",
"tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/bakta/bakta/1.9.4+galaxy0",
"tool_shed_repository": {
"changeset_revision": "ba6990f72184",
"changeset_revision": "d77802fe76f7",
"name": "bakta",
"owner": "iuc",
"tool_shed": "toolshed.g2.bx.psu.edu"
},
"tool_state": "{\"annotation\": {\"complete\": false, \"prodigal\": {\"__class__\": \"RuntimeValue\"}, \"translation_table\": \"11\", \"keep_contig_headers\": false, \"replicons\": {\"__class__\": \"RuntimeValue\"}, \"compliant\": false, \"proteins\": {\"__class__\": \"RuntimeValue\"}, \"meta\": false, \"regions\": {\"__class__\": \"RuntimeValue\"}}, \"input_option\": {\"input_file\": {\"__class__\": \"ConnectedValue\"}, \"min_contig_length\": null, \"bakta_db_select\": {\"__class__\": \"ConnectedValue\"}, \"amrfinder_db_select\": {\"__class__\": \"ConnectedValue\"}}, \"organism\": {\"genus\": null, \"species\": null, \"strain\": null, \"plasmid\": null}, \"output_files\": {\"output_selection\": [\"file_tsv\", \"file_gff3\", \"file_ffn\", \"file_plot\", \"file_gbff\", \"file_embl\", \"file_fna\", \"file_faa\", \"hypo_tsv\", \"hypo_fa\", \"file_json\", \"sum_txt\"]}, \"workflow\": {\"skip_analysis\": null}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
"tool_version": "1.9.3+galaxy0",
"tool_version": "1.9.4+galaxy0",
"type": "tool",
"uuid": "0a32dcad-f456-460e-9e6f-9e306a8fd515",
"when": null,
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],
"uuid": "d55a9e46-a205-4143-b92f-3783499063ed",
"version": 1
}
}

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